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[jalview.git] / src / jalview / gui / AlignFrame.java

2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1551 JAL-962 formatting and code change ripples...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2015-01-21	Jim Procter	Merge branch 'develop' into feature_29/JAL-1372_referen...	blob \| commitdiff \| diff to current
2015-01-18	Jim Procter	JAL-1628 employ new AnnotationFile reader method to...	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Merge branch 'features/JAL-1553_select-columns-by-annot...	blob \| commitdiff \| diff to current
2015-01-13	Charles Ofoegbu	Refactored AnnotationColumnChoser and AnnotationColorCh...	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 merge commit	blob \| commitdiff \| diff to current
2015-01-10	Charles Ofoegbu	JAL-1553 implementation of column selection by annotati...	blob \| commitdiff \| diff to current
2015-01-09	Jim Procter	Merge branch 'JAL-1372_referenceseq' into feature_29...	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Merge branch 'features/JAL-1605_html-svg-export' into...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 added command line support for html export...	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	JAL-1605 merge commit	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Change the Html export to utilize svg	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	Merge branch 'JAL-1517_release282' into develop	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1604 formatting	blob \| commitdiff \| diff to current
2014-11-28	Jim Procter	JAL-1604 revised wording and internationalised dialog	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	Merge branch 'patchJAL-674_offset' into develop	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 JAL-966 new method to retrieve all views	blob \| commitdiff \| diff to current
2014-11-27	Charles Ofoegbu	Merge branch 'bug/JAL-1604_Entire-alignment-submission...	blob \| commitdiff \| diff to current
2014-11-27	Charles Ofoegbu	JAL-1604 Entire sequence submision for MSA job bugfix	blob \| commitdiff \| diff to current
2014-11-25	Charles Ofoegbu	merge commit	blob \| commitdiff \| diff to current
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	Merge branch 'JAL-1569_wuss_vienna_broke' into develop	blob \| commitdiff \| diff to current
2014-11-24	Jim Procter	JAL-1264 update annotation panel dimensions before...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	Merge branch 'feature/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	Merge branch 'features/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-14	Charles Ofoegbu	House keeping	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	Merge branch 'features/typed_annotations_calcId' into...	blob \| commitdiff \| diff to current
2014-11-06	Jim Procter	Merge branch 'features/JAL-1541_BioJsMSAViewer-export...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	Merge branch 'features/JAL-1152annotationSorting' of...	blob \| commitdiff \| diff to current
2014-11-03	gmungoc	JAL-1152 annotation sorting preferences and help docume...	blob \| commitdiff \| diff to current
2014-11-03	Jim Procter	Merge branch 'develop' into features/JAL-1152annotation...	blob \| commitdiff \| diff to current
2014-10-31	gmungoc	JAL-1152 menu tweaks plus new option to put Autocalc...	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 with sticky annotation sort order that updates...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-10-30	gmungoc	JAL-1152 prototype of new Annotations menu with sort...	blob \| commitdiff \| diff to current
2014-10-30	Charles Ofoegbu	JAL-1541 BioJs MSA Viewer export option implementation	blob \| commitdiff \| diff to current
2014-10-27	Jim Procter	Merge branch 'Release_2_8_2_Branch' into merge_r282_dev	blob \| commitdiff \| diff to current
2014-10-10	gmungoc	JAL-1481 wrap tooltip in html	blob \| commitdiff \| diff to current
2014-10-08	gmungoc	Merge branch 'Release_2_8_2_Branch' into	blob \| commitdiff \| diff to current
2014-10-07	gmungoc	JAL-1264 wip	blob \| commitdiff \| diff to current
2014-10-03	Jim Procter	JAL-1355 removed all top level html tags from message...	blob \| commitdiff \| diff to current
2014-10-03	gmungoc	JAL-1506 delete all warning; JAL-1264 show/hide annotations	blob \| commitdiff \| diff to current
2014-09-25	gmungoc	JAL-1264 tidy up use of MouseListener for showHideAnnot...	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	gmungoc	JAL-1264 first cut of panel for annotation show/hide...	blob \| commitdiff \| diff to current
2014-09-19	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1482 feature renderer and manipulation code refacto...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-07-18	j.procter@dundee...	ensure the dataset is instantiated before materialising...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1383 scrubbed envision GUI and documentation	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1485 JAL-1473 use compound i18n messages to constru...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 flag and jalview_properties setting to control...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1466 new calculation menu option to recover the...	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	tidy imports	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 tree calcs performed with ScoreModelI instances	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1473 menu entries for different score models availa...	blob \| commitdiff \| diff to current
2014-02-21	Jim Procter	JAL-1354 use real var-args method signature to avoid...	blob \| commitdiff \| diff to current
2014-02-17	Jim Procter	JAL-535 interface for GUI state update methods that...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-10-17	Jim Procter	JAL-1397 make sure ColourschemeI instances are up to...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...	blob \| commitdiff \| diff to current
2013-10-08	Jim Procter	JAL-1384 group/ungroup sequences with command/ctrl...	blob \| commitdiff \| diff to current
2013-10-07	Jim Procter	JAL-1385 refactor logic to AlignmentViewController	blob \| commitdiff \| diff to current
2013-10-05	Jim Procter	JAL-1379 graceful degradation to legacy service when...	blob \| commitdiff \| diff to current
2013-09-18	Jim Procter	JAL-1355 - fix compilation errors: typos and missing...	blob \| commitdiff \| diff to current
2013-08-30	Jim Procter	JAL-1367 clear the current representative sequence	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2013-06-17	Jim Procter	JAL-1312 more helpful error message when translation...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1173 try to catch OOMs when loading annotation...	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 enable logo display when normalise option selected	blob \| commitdiff \| diff to current
2012-08-29	jprocter	JAL-48 patch NPE when encountering an alignment window...	blob \| commitdiff \| diff to current
2012-08-28	jprocter	JAL-1145 patch: sequence associated annotation with...	blob \| commitdiff \| diff to current
2012-08-24	jprocter	JAL-1143 - ensure we revalidate annotation panel height...	blob \| commitdiff \| diff to current
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