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[jalview.git] / test / jalview / datamodel / AlignmentTest.java

2022-06-24	Jim Procter	JAL-2349 TODO for tests	blob \| commitdiff
2022-06-24	Jim Procter	JAL-2349 JAL-3855 formatting	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-04	gmungoc	Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...	blob \| commitdiff \| diff to current
2019-01-29	hansonr	test package fix for List<DBRefEntry> DBrefs (untested)	blob \| commitdiff \| diff to current
2018-11-28	gmungoc	JAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview	blob \| commitdiff \| diff to current
2018-09-10	gmungoc	JAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth	blob \| commitdiff \| diff to current
2018-03-15	gmungoc	JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES	blob \| commitdiff \| diff to current
2018-02-27	Jim Procter	Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104	blob \| commitdiff \| diff to current
2018-02-05	Jim Procter	JAL-2780 JAL-2781 test AlignmentI.findAnnotations locat...	blob \| commitdiff \| diff to current
2018-02-05	Jim Procter	JAL-2780 JAL-2781 - patch and first test for AlignmentI...	blob \| commitdiff \| diff to current
2018-01-29	gmungoc	JAL-1270 testPadGaps() added	blob \| commitdiff \| diff to current
2018-01-19	kiramt	JAL-2759 Moved propagateInsertions out of HiddenColumns	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-14	gmungoc	JAL-2598 Sequence.getSequence return a copy of the...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-07	kiramt	JAL-2591 More refactoring (incomplete)	blob \| commitdiff \| diff to current
2017-05-15	Jim Procter	JAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-2494 test to cover AnnotatedCollectionI.findAnnotat...	blob \| commitdiff \| diff to current
2017-03-31	gmungoc	JAL-2405 additional checks for circular reference in...	blob \| commitdiff \| diff to current
2017-03-17	kiramt	JAL-2437 Synchronization corrections and unit tests	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	Merge branch 'develop' into features/JAL-2360colourSche...	blob \| commitdiff \| diff to current
2017-01-05	gmungoc	JAL-2374 unit test for (modified) Alignment.findGroup()	blob \| commitdiff \| diff to current
2016-12-21	gmungoc	JAL-2360 Javadoc and test cases for findAnnotation	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 added setup method for JvOptionPane in all... features/JAL-2326_JOptionPane-refactoring	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 format tests	blob \| commitdiff \| diff to current
2016-10-04	gmungoc	JAL-2232 added test that failed before last fix, passes...	blob \| commitdiff \| diff to current
2016-08-30	Jim Procter	JAL-2154 javadoc, fix underloaded version of assertData...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-08-29	Jim Procter	JAL-2154 Optional message parameter for assertDatasetNo...	blob \| commitdiff \| diff to current
2016-08-29	Jim Procter	JAL-2154 new assertDatasetIsNormalised to trivially...	blob \| commitdiff \| diff to current
2016-08-29	Jim Procter	JAL-2154 additional test that removing a duplicate...	blob \| commitdiff \| diff to current
2016-08-22	Jim Procter	JAL-2154 always check dataset sequence for sequence...	blob \| commitdiff \| diff to current
2016-08-22	Jim Procter	JAL-2154 patch verifyAlignment so it fails for duplicat...	blob \| commitdiff \| diff to current
2016-08-22	Jim Procter	JAL-2154 tidy assert messages and fix test to verify...	blob \| commitdiff \| diff to current
2016-08-22	Jim Procter	JAL-2154 test that verifyAlignment fails for duplicate...	blob \| commitdiff \| diff to current
2016-08-19	Jim Procter	JAL-2154 testNG like assertAlignmentDatasetRefs static...	blob \| commitdiff \| diff to current
2016-08-16	Jim Procter	JAL-2154 verify sequenceI/dataset refs for codonmappings	blob \| commitdiff \| diff to current
2016-08-16	Jim Procter	JAL-2154 check alignment isn’t null before validating	blob \| commitdiff \| diff to current
2016-08-16	Jim Procter	JAL-2154 new assert to check reference integrity for...	blob \| commitdiff \| diff to current
2016-08-04	Jim Procter	JAL-2154 make sure all sequences referenced via DBRefEn...	blob \| commitdiff \| diff to current
2016-07-18	Jim Procter	JAL-2110 JAL-2145 fix out of date test for 2baee069f9ed...	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-07-06	gmungoc	JAL-2110 AlignmentUtils.alignCdsAsProtein implemented	blob \| commitdiff \| diff to current
2016-06-20	Jim Procter	JAL-2110 copy alcodonframes only if copy constructor...	blob \| commitdiff \| diff to current
2016-06-19	Jim Procter	JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...	blob \| commitdiff \| diff to current
2016-04-11	tcofoegbu	JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...	blob \| commitdiff \| diff to current
2016-04-01	gmungoc	JAL-1705 reworked AlignmentUtils.makeCdsAlignment and...	blob \| commitdiff \| diff to current
2016-01-05	gmungoc	JAL-653 updating 'align as' tests to match latest tweak...	blob \| commitdiff \| diff to current
2015-12-22	gmungoc	JAL-653 realise virtual mappings and align when adding...	blob \| commitdiff \| diff to current
2015-12-03	gmungoc	JAL-653 mappings always reside on the dataset alignment...	blob \| commitdiff \| diff to current
2015-11-30	gmungoc	JAL-1270 constructor test added	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 licencing for new files in test and utils	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-07-23	tcofoegbu	JAL-1805 modified test setup's so the are ran for group...	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-07	tcofoegbu	JAL-1805 test envirionment separation	blob \| commitdiff \| diff to current
2015-06-23	Jim Procter	JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-19	tcofoegbu	JAL-1270 test suits import order refactor features/JAL-1270_JUnit-to-TestNG features/JAL-1782_JUnit-to-TestNG	blob \| commitdiff \| diff to current
2015-06-19	tcofoegbu	JAL-1270 JUnit to TestNG refactoring	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2014-10-13	gmungoc	JAL-1264 unneeded setup removed	blob \| commitdiff \| diff to current
2014-10-13	gmungoc	JAL-1264 unit test corrected	blob \| commitdiff \| diff to current
2014-10-10	gmungoc	JAL-1264 unit tests	blob \| commitdiff \| diff to current

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