Merge remote-tracking branch 'origin/develop' into
[jalview.git] / utils /
2016-11-28 Jim ProcterJAL-2325 JAL-1878 update minimum versions of JRE for...
2016-11-25 Jim ProcterJAL-2325 JAL-2273 update vms bound to different installers
2016-10-27 tcofoegbuJAL-2177 Jmol update from: Jmol-14.2.14_2015.06.11...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-06 gmungocJAL-2252 now buffered read of 3 lines of a time in...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 formatting and GPL
2016-09-13 gmungocJAL-2119 use File.separator not "/"
2016-09-12 gmungocJAL-2119 case-sensitive href filename checking
2016-09-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-09-08 Jim ProcterJAL-2119 pass/resolve real help dir in link checker
2016-09-08 Jim ProcterJAL-2119 non-zero exit if any invalid links
2016-09-08 Jim ProcterJAL-2119 count and report total invalid anchor links
2016-09-02 gmungocJAL-1854 distinct messages for TODO/FIXME and DOCUMENT ME
2016-09-01 gmungocJAL-1854 rule to disallow import of swing in appletgui
2016-08-29 gmungocJAL-1854 tweaks to rules and README
2016-08-29 gmungocJAL-1854 checkstyle relocated to /utils, newlines to...
2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls...
2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated...
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links
2016-06-01 gmungocJAL-1424 clearer messaging
2016-06-01 gmungocJAL-1424 utility to check resource bundle labels used...
2016-05-30 gmungocJAL-2119 help links checker added to /utils
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere...
2016-04-25 Jim ProcterJAL-2074 reinstate upgrade to groovy 2.8.4-indy
2016-04-25 Jim ProcterJAL-2074 backed out groovy upgrade - back to 1.8.2
2016-04-20 Jim ProcterJAL-2074 updated groovy-all to 2.4.6-indy
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-08 Jim ProcterJAL-1894 add licensing
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 gmungocJAL-1424 tidied output
2015-09-18 Jim ProcterJAL-1888 set verbosity and exclude the 'parallel' attri...
2015-09-18 gmungocJAL-1424 Ant task to report missing language bundle...
2015-09-16 Jim ProcterJAL-1612 JAL-1439 JAL-1845 OSX Installers set Xdock...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils
2015-09-02 Jim ProcterJAL-1853 add test to list for ant task
2015-08-27 Jim ProcterJAL-1844 adding more missing jars - jersey, other json...
2015-08-27 Jim Procterfix for JAL-1844 add jersey-core,json,client-1.19 to...
2015-08-17 gmungocJAL-1551 updated to reflect changes to Eclipse preferen...
2015-08-17 gmungocJAL-1551 properties sorted (unchanged) for ease of...
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop
2015-07-23 Jim ProcterMerge branch 'task/JAL-1794_jettyExamplesServer' into...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-03 gmungocJAL-1759 updated Jmol version in nbproject, install...
2015-07-03 gmungocJAL-892 jnlp, installAnywhere, build, licence reference... features/JAL-892varnaToProject
2015-06-25 Jim ProcterJAL-1794 simple file server class - configured for... task/JAL-1794_jettyExamplesServer
2015-06-23 Jim ProcterMerge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
2015-06-23 Jim ProcterJAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refac...
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterJAL-1783 add java 1.7 and 1.8 class numbers
2015-06-12 Jim ProcterJAL-1766 update HTSJDK to Version 1.133
2015-06-08 Jim ProcterJAL-1766 added a snapshot build of the htsjdk
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
2015-01-20 Charles Ofoegbuclean up
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-08 Charles Ofoegbumerge commit
2014-12-02 Jim ProcterJAL-1602 tweak VM inclusion options
2014-12-02 Jim ProcterJAL-1602 typo in jsonsimple jar
2014-12-02 Jim ProcterJAL-1602 add missing jars to install
2014-12-01 Jim ProcterJAL-1602 upgrade to InstallAnywhere 2014 J17 runtimes
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-10-21 Jim ProcterJWS-59 JAL-1216 patch broken InstallAnywhere build
2014-10-21 Jim ProcterJAL-1551 crlf
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91
2014-10-21 Jim ProcterJAL-1551 crlf changes
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto
2014-07-22 j.procter@dundee... JAL-1333 log4j/slf additional jars
2014-06-06 Jim ProcterJAL-1518 drop Jalopy from utils directory
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop
2014-04-21 Jim ProcterJAL-1458 updated logo for installer
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into develop
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java...
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop
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