git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-1854 two more rules, readme notes
2016-08-26 gmungocJAL-1854 two more rules, readme notes
 commit | commitdiff | tree
2016-08-26 gmungocJAL-1854 commented FallThrough rule
 commit | commitdiff | tree
2016-08-26 gmungocJAL-1854 corrected nested package rule
 commit | commitdiff | tree
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ...
commit | commitdiff | tree
2016-08-26 gmungocJAL-1854 comment switch case fallthrough
 commit | commitdiff | tree
2016-08-25 gmungocJAL-1854 missing case break statements added
 commit | commitdiff | tree
2016-08-25 gmungocJAL-1854 initial checkstyle config
 commit | commitdiff | tree
2016-08-25 gmungocJAL-2178 remove duplicate Uniprot db source
 commit | commitdiff | tree
2016-08-25 gmungocJAL-1424 duplicate key removed
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1355 correct 'thereshold' to 'threshold' in message...
commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 removed unused and duplicated message keys
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 tidy / recode MessageManager calls to support...
commit | commitdiff | tree
2016-08-24 gmungocJAL-1854 removed pointless method override
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 removed two redundant (overwritten) setText...
commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 corrected Message bundle lookup key
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 undo i18n of exception message
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1854 declare immutable class as final
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 recode calls to MessageManager to allow code...
commit | commitdiff | tree
2016-08-24 gmungocJAL-2151 port fix to applet
 commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 enhanced for cleaner reporting, checks calls...
commit | commitdiff | tree
2016-08-24 gmungocJAL-1424 also report (obsolete) keys in translated...
commit | commitdiff | tree
2016-08-23 gmungocJAL-2176 unused field / methods removed
 commit | commitdiff | tree
2016-08-23 gmungocJAL-2174 markColumns() refactored inside ColumnSelection
 commit | commitdiff | tree
2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for...
commit | commitdiff | tree
2016-08-22 gmungocJAL-2175 code tidying
 commit | commitdiff | tree
2016-08-22 gmungocJAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip
 commit | commitdiff | tree
2016-08-22 gmungocJAL-2011 adjust method to fix failing unit test
 commit | commitdiff | tree
2016-08-19 gmungocJAL-2174 bug fixes + refactoring to allow + unit tests
 commit | commitdiff | tree
2016-08-18 gmungocJAL-2077 using Platform method to check for Ctrl-down
 commit | commitdiff | tree
2016-08-18 gmungocJAL-1445 status message '...not containing...' for...
commit | commitdiff | tree
2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS...
commit | commitdiff | tree
2016-08-18 gmungocJAL-1855 fail gracefully if XML has no <sequence> element
 commit | commitdiff | tree
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac...
commit | commitdiff | tree
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected()
 commit | commitdiff | tree
2016-08-17 gmungocJAL-2146 status message now with formatted residue...
commit | commitdiff | tree
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns
 commit | commitdiff | tree
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection
 commit | commitdiff | tree
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link...
commit | commitdiff | tree
2016-08-17 gmungocJAL-2172 handle case where column selection is not...
commit | commitdiff | tree
2016-08-16 gmungocJAL-2172 unit test added
 commit | commitdiff | tree
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item
 commit | commitdiff | tree
2016-08-10 gmungocJAL-2124 i18n of "All" menu item
 commit | commitdiff | tree
2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation)
 commit | commitdiff | tree
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos...
commit | commitdiff | tree
2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manually...
commit | commitdiff | tree
2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative
 commit | commitdiff | tree
2016-08-08 gmungocJAL-2168 -nonews option also mentioned here
 commit | commitdiff | tree
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links
 commit | commitdiff | tree
2016-08-08 gmungocJAL-2168 document '-nonews' parameter
 commit | commitdiff | tree
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied
 commit | commitdiff | tree
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties
 commit | commitdiff | tree
2016-08-05 gmungocJAL-2164 add transferred annotation to sequence
 commit | commitdiff | tree
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant
 commit | commitdiff | tree
2016-08-04 gmungocJAL-2008 handle fast mouse drag of feature ordering...
commit | commitdiff | tree
2016-08-04 gmungocJAL-2015 convert Color from colour picker to FeatureColour
 commit | commitdiff | tree
2016-07-20 gmungocJAL-2154 poke JSeq start/end into Vamsas sequence
 commit | commitdiff | tree
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus
 commit | commitdiff | tree
2016-07-20 gmungocJAL-2023 avoid writing / loading empty mappings
 commit | commitdiff | tree
2016-07-20 gmungocJAL-2023 JAL-1681 fixed bug in computing '+' for co...
commit | commitdiff | tree
2016-07-20 gmungocJAL-2068 AnnotationWorker create/update annotation...
commit | commitdiff | tree
2016-07-19 gmungocJAL-2068 small refactor to reuse shared method
 commit | commitdiff | tree
2016-07-19 gmungocJAL-2068 update rather than recreate AlignmentAnnotation...
commit | commitdiff | tree
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences
 commit | commitdiff | tree
2016-07-18 gmungocJAL-2105 check content of Ensembl REST ping response
 commit | commitdiff | tree
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches...
commit | commitdiff | tree
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org...
commit | commitdiff | tree
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column...
commit | commitdiff | tree
2016-07-18 gmungocJAL-1976 Spanish version of new message
 commit | commitdiff | tree
2016-07-18 gmungocJAL-2015 restore check for null colour in paint()
 commit | commitdiff | tree
2016-07-09 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-07-07 gmungocJAL-2110 added alignAsSameSequences to handle 'direct...
commit | commitdiff | tree
2016-07-07 gmungocJAL-2110 field 'cf' moved to stack
 commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 generic rather than specific check for gap...
commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 AlignmentUtils.alignCdsAsProtein implemented
 commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds
 commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 add 'mapFromId' to Mapping (for e.g. EMBL...
commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 cross-refs from protein to show cds not non...
commit | commitdiff | tree
2016-07-06 gmungocJAL-2110 fixes and tests for adding dbrefs to EMBL...
commit | commitdiff | tree
2016-07-04 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 use shared dataset when copying alignment...
commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 added another test case (should fail but doesn't)
 commit | commitdiff | tree
2016-07-04 gmungocRevert "JAL-2110 use shared alignment dataset when...
commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 use shared alignment dataset when copying...
commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 bug fix / test for searchDataset mappings...
commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 unused method removed
 commit | commitdiff | tree
2016-07-04 gmungocJAL-2110 defensive check in code
 commit | commitdiff | tree
2016-07-01 gmungocJAL-2110 bug fixing and tidying for get cross-refs
 commit | commitdiff | tree
2016-07-01 gmungocJAL-2110 set reasonable bounds to initial split of...
commit | commitdiff | tree
2016-07-01 gmungocJAL-2110 add 'products' parameter to filter results...
commit | commitdiff | tree
2016-07-01 gmungocJAL-2110 code/comment tidy
 commit | commitdiff | tree
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-06-30 gmungocJAL-2110 fixes and tests for synthesized EMBLCDSPROTEIN...
commit | commitdiff | tree
2016-06-30 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-06-29 gmungocJAL-1270 avoid overwriting .jalview_properties with...
commit | commitdiff | tree
2016-06-29 gmungocMerge branch 'develop' into features/JAL-2110_crossRefDuplic...
commit | commitdiff | tree
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequence...
commit | commitdiff | tree
2016-06-27 gmungoctidied loop with generic iteration / loop variable
 commit | commitdiff | tree
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport
 commit | commitdiff | tree
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverReferenceS...
commit | commitdiff | tree
next