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JAL-2197 add jpredfile as alternative form of jnetfile parameter on applet
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile...
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2016-10-24 Jim ProcterMerge branch 'develop' into releases/Release_2_10_0_Branch
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2016-10-24 Jim ProcterJAL-2089 JAL-2195 release notes
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2016-10-24 Jim ProcterJAL-2089 JAL-2283 release notes
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2016-10-24 Jim ProcterMerge branch 'bug/JAL-2283consColourEnabled' into develop
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2016-10-24 Jim ProcterJAL-2044 documentation
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2016-10-20 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into releases...
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2016-10-20 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-10-20 Jim ProcterJAL-2089 update release date for 2.10.0b1 to Tuesday...
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2016-10-20 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-10-19 Jim ProcterJAL-2269 JAL-2195 review and revised test
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2016-10-19 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-10-19 Jim ProcterJAL-2089 update 2.10.0b1 release date
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2016-10-18 Jim ProcterJAL-2089 release notes and new known defects
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2016-10-18 Jim ProcterJAL-2039 release notes
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2016-10-18 Jim ProcterJAL-2245 release notes
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2016-10-18 Jim ProcterJAL-2089 2.10.0b1 release notes
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2016-10-18 Jim ProcterJAL-2039 rejig instructions for Structure Chooser and...
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2016-10-05 Jim ProcterJAL-2189 update year in author.props
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2016-10-05 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-10-05 Jim ProcterJAL-2189 CITATION file and reorder authors: 2.10: JBP...
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2016-10-05 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-05 Jim ProcterJAL-2252 workaround for link checker not recognising...
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2016-10-05 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-05 Jim ProcterJAL-2189 updated third party licenses
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2016-10-05 Jim ProcterJAL-2189 release notes
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2016-10-05 Jim ProcterJAL-2036 rebuild menus for each panel before adding...
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2016-10-05 Jim ProcterJAL-2189 release notes
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2016-10-05 Jim ProcterJAL-2189 tidy up release notes
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2016-10-05 Jim ProcterJAL-2189 tweak ensembl release notes
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2016-10-05 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-05 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-10-05 Jim ProcterJAL-2189 formatting and release notes
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2016-10-05 Jim ProcterJAL-2189 license header
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2016-10-05 Jim ProcterJAL-2189 apply license
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2016-10-05 Jim ProcterJAL-2189 format help
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2016-10-05 Jim ProcterJAL-2189 format tests
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2016-10-05 Jim ProcterJAL-2189 formatting and GPL
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2016-10-05 Jim ProcterJAL-2189 source formatting
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2016-10-05 Jim ProcterRevert "JAL-2245 Castor mapping and code changes for...
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2016-10-05 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-10-05 Jim ProcterJAL-2189 release notes/whats new
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2016-10-05 Jim ProcterJAL-2189 JAL-2152 Chimera 1.11.1 minimum version requirement
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2016-10-04 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-10-04 Jim ProcterJAL-2189 release notes
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2016-10-04 Jim ProcterJAL-2189 link to feature sorting documentation
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2016-10-04 Jim ProcterJAL-2189 JAL-2005 mention alignment order preservation...
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2016-10-04 Jim ProcterJAL-2189 release notes
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2016-10-04 Jim ProcterJAL-2005 JAL-599 test alignment and features for checking...
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2016-10-03 Jim ProcterJAL-2189 update RELEASE file
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2016-10-03 Jim ProcterJAL-2189 more release notes
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2016-10-03 Jim ProcterJAL-2189 ensembl sequence fetching, locus view and...
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2016-10-03 Jim ProcterJAL-2189 release notes
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2016-10-03 Jim ProcterJAL-2210 use addDBRef to ensure normalisation (just...
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2016-10-03 Jim ProcterJAL-2210 need to add both transcript and product, and...
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2016-10-03 Jim ProcterJAL-2210 JAL-2232 remove version number from ENACDS...
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2016-10-03 Jim ProcterJAL-2210 hack to remove EMBL from Protein crossrefs...
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2016-10-03 Jim ProcterJAL-2210 explicit ‘doNotAdd’ list to prevent sequences...
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2016-10-02 Jim ProcterJAL-2210 first pass at attempting to fix CrossRef tests...
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2016-10-02 Jim ProcterJAL-2210 remove ENSEMBL from protein DB list:
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2016-10-02 Jim ProcterJAL-2210 two pass attempt to import retrieved sequences...
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2016-10-02 Jim ProcterJAL-2210 try to merge all sequences referenced by a...
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2016-10-02 Jim ProcterJAL-2210 comments
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2016-10-02 Jim ProcterJAL-2210 discover candidate dataset sequences for an...
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2016-10-02 Jim ProcterJAL-2079 pass server name when reporting FTS ‘warning...
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2016-10-01 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_uniprot_pri...
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2016-10-01 Jim ProcterJAL-2210 factored out code for processing cross-referenced...
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2016-10-01 Jim ProcterJAL-2210 refactor code to remove from a list of dbrefs...
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2016-09-30 Jim ProcterJAL-2210 some DBRef xref/ref correspondences may add...
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2016-09-30 Jim ProcterJAL-2210 CrossRef.findInDataset should search for presence...
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2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP...
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2016-09-30 Jim ProcterJAL-2238 release notes
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2016-09-30 Jim ProcterJAL-2236 release notes and additional docs
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2016-09-30 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
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2016-09-29 Jim ProcterJAL-2089 fix broken help link
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2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc...
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2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
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2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into...
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2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup
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2016-09-28 Jim ProcterJAL-2210 patch network test for additional refs
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2016-09-28 Jim ProcterJAL-2210 JAL-2235 fix deriveSequence test for tightened...
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2016-09-28 Jim ProcterJAL-1270 read test props before manipulating config...
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2016-09-28 Jim ProcterJAL-2235 patch tests where self-reference was used...
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2016-09-28 Jim ProcterJAL-2235 implicit test to check that exception is raised...
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2016-09-28 Jim ProcterJAL-2235 raise exceptions if self reference or reference...
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2016-09-28 Jim ProcterJAL-2210 patch for when no DBRefs on sequence
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2016-09-28 Jim ProcterJAL-2210 instrument setDBRefs to call ensurePrimaries
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2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting...
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2016-09-28 Jim ProcterJAL-2232 extract EMBLCDS refs from EMBL refs on Uniprot...
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2016-09-27 Jim ProcterMerge branch 'develop' into bug/JAL-2210_ensembl_uniprot_pri...
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2016-09-27 Jim ProcterJAL-2210 formatting
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2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions
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2016-09-27 Jim ProcterJAL-2210 promote direct dbrefs from verified sources...
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2016-09-27 Jim ProcterJAL-2210 resolve todo - addDBRef adds to dataset sequence...
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2016-09-26 Jim ProcterJAL-2148 release notes
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2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
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2016-09-24 Jim ProcterJAL-1919 whats new link
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation...
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2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structure...
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2016-09-23 Jim ProcterJAL-1957 release notes
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