jalview.git
2020-08-12 Ben SoaresJAL-3676 Removed BACKUPFILESPRESETENTRY logging for...
2020-08-12 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-08-11 Jim ProcterJAL-3675 fix issue attribution for JAL-3667 release...
2020-08-11 Jim ProcterJAL-3675 update release notes for JAL-3673 and tested...
2020-08-11 Jim ProcterJAL-3673 make sure font metrics are updated if dealing...
2020-08-11 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-08-11 gmungocJAL-3371 more fine-grained slider; set Param slider...
2020-08-10 Jim ProcterJAL-3628 JAL-3708 call Cache.initLogger() before using...
2020-08-05 Jim ProcterJAL-3628 init log after loading testProps for each...
2020-08-05 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
2020-08-05 gmungocJAL-3692 unit test updated for ?gzip download endpoint URL patch/JAL-3692enaEndpointFlatfile
2020-08-05 gmungocJAL-3692 parse multiline feature qualifiers and escaped...
2020-08-05 Jim ProcterJAL-3675 release notes for JAL-3477, JAL-3667, JAL...
2020-08-05 Jim ProcterMerge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL...
2020-08-04 Ben SoaresJAL-3477 Improved command line arguments description...
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax...
2020-08-04 Ben SoaresJAL-3477 added help documentation for executable jar...
2020-08-03 Jim ProcterJAL-3675 report JAL-3701 as known defect
2020-08-03 Jim ProcterJAL-3675 release notes for JAL-3692
2020-08-03 Jim ProcterMerge branch 'patch/JAL-3692enaEndpointFlatfile' into...
2020-08-03 Jim ProcterJAL-3692 fix up test for 2.11.1 series datamodel API
2020-08-03 gmungocJAL-3692 set CDS /product as EMBLCDSPROTEIN description
2020-08-03 gmungocJAL-3692 refactor/complete parsing, more unit test...
2020-08-03 gmungocJAL-3692 parse DE for description, and other refactoring...
2020-08-03 gmungocJAL-3692 URL tests updated
2020-08-03 gmungocJAL-3692 unit test (J03321), fixes, dbrefs; todo: prote...
2020-08-03 gmungocJAL-3692 EMBL flatfile fetcher / parser (todo: CDS...
2020-07-29 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ...
2020-07-29 Jim ProcterJAL-3675 mention -open argument in the command line...
2020-07-29 Jim ProcterJAL-3675 JAL-3570 JAL-3608 JAL-2983 release notes and...
2020-07-28 Jim ProcterJAL-3675 update release note for JAL-2656
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-28 Jim ProcterJAL-3615 update tests for Rfam/Pfam specific gzip endpoints
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3615 and JAL-2656
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for...
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam
2020-07-27 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into relea...
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3621
2020-07-27 gmungocJAL-3621 corrected sequence feature sort and test
2020-07-27 gmungocJAL-3621 update to intervalstore v1.1
2020-07-27 Jim ProcterJAL-3675 release notes for JAL-3695 JAL-3696 JAL-3697
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to...
2020-07-27 Jim ProcterJAL-3695 htsjdk 2.12 -> 2.23 (library change only,...
2020-07-08 Ben SoaresMerge branch 'bug/JAL-3541_cherry_pick_to_releases_Rele...
2020-07-08 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-07-08 Ben SoaresMerge branch 'task/JAL-3609_HiDPI_support_in_java'...
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236
2020-07-07 Ben SoaresJAL-3608 ex stacktraces now go to Cache.log.debug
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-07 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
2020-07-07 Ben SoaresJAL-3628 System.out/err -> Cache.log.info/error
2020-07-07 Ben SoaresJAL-3541 ensure deletion of cloverReportDir
2020-07-07 Ben SoaresJAL-3541 small fix for clover.xml location expected...
2020-07-07 soaresJAL-3541 added a property/variable style comment to...
2020-07-07 Ben SoaresJAL-3541 Fixed report path for build artifacts
2020-07-07 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting
2020-07-07 Ben SoaresJAL-3541 Individual tests now instrumented and reported...
2020-07-07 Ben SoaresJAL-3541 Helpers for running tests, and other commands...
2020-07-07 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverRepor...
2020-07-07 Ben SoaresJAL-3541 increase maxheapsize for test worker process
2020-07-07 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir...
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed
2020-07-07 Ben SoaresJAL-3541 perhaps a better clean for clover
2020-07-07 Ben SoaresJAL-3541 rejigged clover tasks very mildly
2020-07-07 Ben SoaresJAL-3685 Fixed single quotes in formatMessage messages
2020-07-07 Ben SoaresJAL-3628 Fixed oddly worded and non-formatted error...
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
2020-07-06 Ben SoaresJAL-3676 improvement for visual selection of console...
2020-07-06 Ben SoaresMerge branch 'bug/JAL-3628_Unable_to_save_update_to_exi...
2020-07-06 Ben SoaresJAL-3628 improvement for visual selection of console...
2020-07-06 Ben SoaresJAL-3628 Fix for slightly incorrect boolean usage to...
2020-07-06 Ben SoaresJAL-3628 Even more Cache.log.debug statements
2020-07-06 gmungocJAL-3570 JAL-3187 spanish translations for tabbed featu...
2020-07-06 gmungocJAL-3570 updated external help links
2020-07-04 Jim ProcterMerge branch 'merge/JAL-3609_and_JAL-3608' into release...
2020-07-04 Jim ProcterJAL-3675 version update and documentation for JAL-3493...
2020-07-04 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
2020-07-04 Jim ProcterJAL-3638 don’t move cursor to next gap after moving...
2020-07-04 Jim ProcterJAL-3680 check whether a sequence selection exists...
2020-07-04 Jim ProcterJAL-3638 shift+arrow keys in cursor mode jumps cursor...
2020-07-04 Ben SoaresJAL-3628 More Cache.log.debug statements
2020-07-02 Ben SoaresJAL-3676 code review -- added non-listed Level into...
2020-07-01 Ben SoaresJAL-3609 Allow pass-through of setHiDPIScale property...
2020-07-01 Ben SoaresMerge branch 'task/JAL-3608_property_set_laf_and_tests_...
2020-06-30 Ben SoaresJAL-3676 Added Log Level ComboBox and Copy to Clipboard...
2020-06-29 Jim ProcterJAL-3675 2.11.1.1 release notes
2020-06-29 Jim ProcterMerge branch 'patch/Clear_Highlight_JAL-3493' into...
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all
2020-06-29 Jim ProcterJAL-3493 failing test - creates a highlight and column...
2020-06-24 Ben SoaresJAL-3667 Fixed single backupfile error deleting the...
2020-06-21 Ben SoaresJAL-3609 Report when scale setting used.
2020-06-21 Ben SoaresJAL-3609 New auto-scale 'formula' for linux HiDPI....
2020-06-16 Ben SoaresJAL-3608 non-JS cherry-pick
2020-06-16 Ben SoaresJAL-3608 formatting save only
2020-06-16 Ben SoaresJAL-3608 formatting save only
2020-06-15 Ben SoaresJAL-3628 Changed other calls to renameTo to use BackupF...
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