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JAL-3518 removed unneeded override in ChimeraCommands
[jalview.git] / examples /
2015-06-30 Jim ProcterJAL-1682 JAL-1645 remove references to 2.8.3 tree | commitdiff
2015-06-25 tcofoegbuJAL-857 updated examples directory web pages to be... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 JAL-1140 added RNAML example alignment... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein... tree | commitdiff
2015-06-02 tcofoegbuJAL-1641 updated examples/applets.html tree | commitdiff
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... tree | commitdiff
2015-04-13 gmungocJAL-1695 enableSplitFrame=true for applet example tree | commitdiff
2015-04-08 gmungocJAL-1684 adjusting parameters for split frame applet... tree | commitdiff
2015-04-08 gmungocJAL-1690 scaleProteinAsCdna new applet parameter documented tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-26 gmungocJAL-1665 getSequenceFeatures; Desktop.getAlignFrames... tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-12-01 Jim ProcterMerge branch 'bug/JAL-1610refAnnotationsInViews' into... tree | commitdiff
2014-12-01 Jim Procterfile for JAL-1268 jalview.io.Jalview2xmlTests.testTCoff... tree | commitdiff
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export... tree | commitdiff
2014-11-14 Charles OfoegbuHouse keeping tree | commitdiff
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into... tree | commitdiff
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping... tree | commitdiff
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe... tree | commitdiff
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 crlf changes tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto tree | commitdiff
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support tree | commitdiff
2014-09-15 gmungocJAL-1542 script to show aligned positions of selected... tree | commitdiff
2014-09-12 gmungocJAL-1516 handle null annotations tree | commitdiff
2014-09-12 j.procter@dundee... JAL-1516 Annotation row score output script for jalview... tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-28 Jim ProcterJAL-1509 use local deployJava tree | commitdiff
2014-05-28 Jim Procterfix for JAL-1510 - workaround for IE9 tree | commitdiff
2014-05-27 Jim ProcterJAL-1509 update deployJava.js from java.com/js/deployJa... tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop tree | commitdiff
2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices colou... tree | commitdiff
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop tree | commitdiff
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-17 Jim ProcterJAL-1445 groovy script demonstrating how to select... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'JAL-957_jbake' into r281_JAL-957 tree | commitdiff
2014-01-29 Jim ProcterJAL-957 reinstate jnetfile parameter tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 patch broken comments in css tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2014-01-29 Jim ProcterJAL-1400 added explanation about signed/unsigned applet... tree | commitdiff
2014-01-29 Jim ProcterJAL-970 JAL-1400 fixed layout tree | commitdiff
2014-01-28 Jim ProcterJAL-957 reinstate the PDBfile parameter tree | commitdiff
2014-01-28 Jim ProcterJAL-957 neater boilerplate link to signed/unsigned... tree | commitdiff
2014-01-28 Jim ProcterMerge branch 'JAL-1400_sandboxapp' into JAL-957_jbake tree | commitdiff
2014-01-28 Jim ProcterMerge branch 'JAL-957_jbake' into Release_2_8_Branch tree | commitdiff
2014-01-28 Jim ProcterJAL-957 permissions property for example pages (jbake... tree | commitdiff
2014-01-28 Jim ProcterJAL-957 unsigned applet demo pages created with jbake tree | commitdiff
2014-01-28 Jim ProcterJAL-957 new jbake-generated example pages tree | commitdiff
2014-01-18 jprocterformatting tree | commitdiff
2014-01-18 jprocterJAL-1400 numeric version numbers only for minimum jre... tree | commitdiff
2014-01-17 jprocterJAL-1400 default JalviewLite build is signed applet... tree | commitdiff
2014-01-14 Jim ProcterJAL-1400 specify minimum 1.6 JRE tree | commitdiff
2014-01-13 Jalview build ManagerMerge branch 'Release_2_8_Branch' into WIP_fix_JAL... WIP_fix_JAL-1423 tree | commitdiff
2014-01-13 Jalview build ManagerJAL-1400 signed applets generally run with all permissi... tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs_r281' into develop tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into JAL-1422_srs_r281 tree | commitdiff
2014-01-13 Jim ProcterMerge branch 'JAL-1422_srs' into Release_2_8_Branch tree | commitdiff
2014-01-13 Jim ProcterJAL-1422 remove SRS and expasy links and replace with... tree | commitdiff
2013-11-26 Jim ProcterMerge branch 'testMerge' into trialMergeDev tree | commitdiff
2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into testMerge tree | commitdiff
2013-11-26 Jim Proctersandbox permissions tree | commitdiff
2013-11-26 Jim Procternew required parameter for deploying the applet tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into develop tree | commitdiff
2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch tree | commitdiff
2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-08-27 Daniel BartonJAL-1358 RNAStructExportImport test file mirrors Disord... tree | commitdiff
2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into develop tree | commitdiff
2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into Release_2_8_1_Branch tree | commitdiff
2013-07-09 Jim ProcterJAL-895 - patch example files with correct Fe positions tree | commitdiff
2013-06-21 Jim ProcterMerge branch 'JAL-1294_iupredexportimport' into develop tree | commitdiff
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota... tree | commitdiff
2013-06-07 Jim ProcterMerge branch '2_8_1_patch_multiharmony' into develop tree | commitdiff
2013-06-07 Jim ProcterJAL-724 JAL-715 refactor and create new test for RSBS... tree | commitdiff
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into... tree | commitdiff
2013-05-24 Jim ProcterJAL-1300 test and example data for parsing annotation... tree | commitdiff
2013-05-24 Jim ProcterJAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294 tree | commitdiff
2013-02-14 Jim ProcterMerge branch 'JAL-1199-Stk_writing' into rnaml_test tree | commitdiff
2013-02-06 jprocterMerge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch tree | commitdiff
2013-02-06 jprocterJAL-1199 refactored stockholm test code from main class... tree | commitdiff
2013-01-18 jprocterMerge branch 'JAL-1254-hotfix' into develop tree | commitdiff
2012-11-21 jproctervalid URLs in website menu frame and fixed GA code tree | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard tree | commitdiff
2012-11-12 jprocterupdate footer for static page tree | commitdiff
2012-11-09 jprocterga tracking, footers and footer link styles tree | commitdiff
2012-11-09 jproctermore tweaking of static pages and rejigging applet... tree | commitdiff
2012-11-07 jprocterand more tweaks. tree | commitdiff
2012-11-07 jprocterJAL-1201 more layout tweaks tree | commitdiff
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