source.jalview.org Git - jalview.git/history

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[jalview.git] / src / MCview / PDBChain.java

2018-04-23	gmungoc	JAL-2952 set negative TempFactor values as AlignmentAnn...	blob \| commitdiff
2018-02-11	Jim Procter	JAL-2781 mark aligned positions via StructureMapping...	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-05-25	gmungoc	JAL-2557 removal of Sequence.sequenceFeatures	blob \| commitdiff \| diff to current
2017-05-25	gmungoc	JAL-2050 make SequenceFeature.score final, adjust const...	blob \| commitdiff \| diff to current
2017-05-09	gmungoc	JAL-2505 use constructors to set (what will be) final...	blob \| commitdiff \| diff to current
2017-03-01	gmungoc	Merge branch 'features/JAL-2295setChimeraAttributes...	blob \| commitdiff \| diff to current
2017-01-09	gmungoc	JAL-2371 remove ColourSchemeI.findColour(c), pure inter...	blob \| commitdiff \| diff to current
2016-11-11	gmungoc	Merge branch 'develop' into features/JAL-2295setChimera...	blob \| commitdiff \| diff to current
2016-11-09	gmungoc	JAL-2295 single constant for "RESNUM" feature name	blob \| commitdiff \| diff to current
2016-11-08	tcofoegbu	JAL-2292 updated method calls	blob \| commitdiff \| diff to current
2016-11-04	tcofoegbu	JAL-2292 squashed bug that breaks feature mapping for...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-10	tcofoegbu	JAL-2262 JAL-2195 bug fix for mapping local structure...	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-08-05	gmungoc	JAL-2164 add transferred annotation to sequence	blob \| commitdiff \| diff to current
2016-07-08	tcofoegbu	JAL-1919 Fixed failing tests, enabled HETATM processing...	blob \| commitdiff \| diff to current
2016-07-01	tcofoegbu	JAL-2135 bugfix for error preventing processing of...	blob \| commitdiff \| diff to current
2016-06-30	tcofoegbu	JAL-1919 updated PDBSequenceFetcherTest and JMol parser...	blob \| commitdiff \| diff to current
2016-04-13	tcofoegbu	JAL-1270 more fix for failing Functional test	blob \| commitdiff \| diff to current
2016-03-30	tcofoegbu	JAL-1668 further clean-up of popup menu and NPE check...	blob \| commitdiff \| diff to current
2016-03-21	tcofoegbu	develop merge	blob \| commitdiff \| diff to current
2016-03-15	tcofoegbu	JAL-1919 refined structure view annotation settings...	blob \| commitdiff \| diff to current
2016-03-11	tcofoegbu	JAL-1478 Fixed ArrayIndexOutOfBoundsException while...	blob \| commitdiff \| diff to current
2016-03-11	tcofoegbu	JAL-1818 reimplemented sequence and annotation processi...	blob \| commitdiff \| diff to current
2016-02-26	tcofoegbu	JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'	blob \| commitdiff \| diff to current
2016-02-25	tcofoegbu	JAL-1919 initial support for mmCIF using JMol API....	blob \| commitdiff \| diff to current
2016-02-19	tcofoegbu	JAL-2009 Codes to enable storing inserted residues...	blob \| commitdiff \| diff to current
2016-01-25	tcofoegbu	JAL-1998 bugfix for division by zero error for PDB...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1421 generic collections in MCView package (+unit...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 patch to fix bug with showing reference annotat...	blob \| commitdiff \| diff to current
2014-11-27	Jim Procter	JAL-674 formatting	blob \| commitdiff \| diff to current
2014-11-26	Jim Procter	JAL-674 disable addition of PDBRESNUM annotation line	blob \| commitdiff \| diff to current
2014-11-26	Jim Procter	JAL-674 nicer temperature factor labelling and include...	blob \| commitdiff \| diff to current
2014-11-18	Jim Procter	JAL-674 make temperature factor, local secondary struct...	blob \| commitdiff \| diff to current
2014-11-12	Jim Procter	JAL-674 switch from .transfer to .liftOver for transfer...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 hang on to sequences created by secondary parsi...	blob \| commitdiff \| diff to current
2014-10-21	Jim Procter	JAL-1551 formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-21	jprocter	retrieve all sequences matching a particular name ...	blob \| commitdiff \| diff to current
2011-07-07	jprocter	extract sequence from DNA bases like 'DG' (JAL-866)	blob \| commitdiff \| diff to current
2011-01-18	jprocter	javadoc	blob \| commitdiff \| diff to current
2011-01-18	jprocter	javadoc	blob \| commitdiff \| diff to current
2011-01-05	jprocter	JAL-727	blob \| commitdiff \| diff to current
2010-11-11	jprocter	improved logic for distinguishing amino acids and nucle...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-08-18	jprocter	cutn'paste fix so rna residue chains are assembled...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	typo bugfix	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patch for JAL-556	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-10-30	jprocter	na pdb: recognise NA residue names	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-05-07	amwaterhouse	Use PDB id for grouping mappings	blob \| commitdiff \| diff to current
2007-04-25	jprocter	transfer of residue numbering as alignment annotation	blob \| commitdiff \| diff to current
2007-04-19	jprocter	tfactor annotation description includes full sequenceID	blob \| commitdiff \| diff to current
2007-04-19	jprocter	tfactor and occupancy extracted from PDB file, and...	blob \| commitdiff \| diff to current
2007-03-26	jprocter	PDB residue numberings transfered and alignment view...	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	blank space for chain name if empty	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	formatting	blob \| commitdiff \| diff to current
2007-02-01	amwaterhouse	find colours uncommented	blob \| commitdiff \| diff to current
2007-01-23	jprocter	transfer resnum features now returns features (could...	blob \| commitdiff \| diff to current
2007-01-19	jprocter	PDBChain maintains reference to dataset of sequences...	blob \| commitdiff \| diff to current
2007-01-18	jprocter	fixed last-residue bug and added sequence feature creat...	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	sequence is char []	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2005-12-09	amwaterhouse	All colours added to Structure viewer	blob \| commitdiff \| diff to current
2005-12-08	amwaterhouse	EqualsignoreCase	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	PDB structure viewer updated	blob \| commitdiff \| diff to current
2005-09-30	amwaterhouse	Remove redundancy from Eclipse	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	blob \| commitdiff \| diff to current
2005-05-05	amwaterhouse	colour by sequence just about works	blob \| commitdiff \| diff to current
2005-03-23	amwaterhouse	drawableSequence removed	blob \| commitdiff \| diff to current
2004-11-18	amwaterhouse	New files	blob \| commitdiff \| diff to current

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