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re-enabled new uniprot sequence fetcher on spike branch
[jalview.git] / src / MCview /
2016-04-24 Jim ProcterJAL-2077 - reinstate popups on osx tree | commitdiff
2016-04-13 tcofoegbuJAL-1270 more fix for failing Functional test tree | commitdiff
2016-03-30 tcofoegbuJAL-1668 further clean-up of popup menu and NPE check... tree | commitdiff
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher... tree | commitdiff
2016-03-21 tcofoegbudevelop merge tree | commitdiff
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... tree | commitdiff
2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while... tree | commitdiff
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor tree | commitdiff
2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM' tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-23 tcofoegbudevelop merge tree | commitdiff
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues... tree | commitdiff
2016-02-09 tcofoegbumerge develop tree | commitdiff
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-25 tcofoegbuJAL-1998 bugfix for division by zero error for PDB... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... tree | commitdiff
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... tree | commitdiff
2015-08-24 gmungocJAL-1759 removed trim() of Atom.resNumIns as not backwa... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports tree | commitdiff
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this... tree | commitdiff
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame... tree | commitdiff
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped... tree | commitdiff
2015-06-04 gmungocJAL-1421 generic collections in MCView package (+unit... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-11-27 Jim ProcterJAL-674 patch to fix bug with showing reference annotat... tree | commitdiff
2014-11-27 Jim ProcterJAL-674 formatting tree | commitdiff
2014-11-26 Jim ProcterJAL-674 employ the provided DNA/Protein matrix string... tree | commitdiff
2014-11-26 Jim ProcterJAL-674 disable addition of PDBRESNUM annotation line tree | commitdiff
2014-11-26 Jim ProcterJAL-674 nicer temperature factor labelling and include... tree | commitdiff
2014-11-18 Jim ProcterJAL-674 make temperature factor, local secondary struct... tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... tree | commitdiff
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... tree | commitdiff
2014-11-12 Charles OfoegbuAdded support for SVG Export tree | commitdiff
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer... tree | commitdiff
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check... tree | commitdiff
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi... tree | commitdiff
2014-10-30 Jim ProcterJAL-1551 format and tidy tree | commitdiff
2014-10-21 Jim ProcterJAL-674 check for null vector before ... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not... tree | commitdiff
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio... tree | commitdiff
2014-10-21 Jim ProcterJAL-1551 formatting tree | commitdiff
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created... tree | commitdiff
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static tree | commitdiff
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 typo tree | commitdiff
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating... tree | commitdiff
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure... tree | commitdiff
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc tree | commitdiff
2014-09-26 darolmarJAL-1355 tree | commitdiff
2014-09-23 darolmarJAL-1355 tree | commitdiff
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur... tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1... tree | commitdiff
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-12-25 darolmarJAL-1355 (basic i18n support) tree | commitdiff
2013-10-15 Jim Procterworkaround for JAL-1395 tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1 tree | commitdiff
2013-08-29 darolmari18n tree | commitdiff
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs... tree | commitdiff
2013-06-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 tree | commitdiff
2013-06-09 Jim ProcterJAL-674 avoid runtime dependency on annotate3d webservi... tree | commitdiff
2013-05-21 Jim ProcterJAL-1140 JAL-674 process with annotate3d and Jmol to... tree | commitdiff
2013-02-13 jprocterfix merge conflicts for finess on JAL-1140 (introduced... tree | commitdiff
2013-02-13 jprocterJAL-1214 todo tree | commitdiff
2013-02-13 jprocterJAL-674 commented out annotate3d calling code for Jmol... tree | commitdiff
2013-02-13 jprocterJAL-1028 JAL-674 hooks to call external processing... tree | commitdiff
2012-12-07 jprocterproxy commit for Anne Menard <menard.annec@gmail.com... tree | commitdiff
2012-12-04 jprocterJAL-1140 - IO classes should only raise generic IOExcep... tree | commitdiff
2012-12-04 jprocterJAL-1214 todo tree | commitdiff
2012-12-04 jprocterJAL-674 commented out annotate3d calling code for Jmol... tree | commitdiff
2012-12-04 jprocterJAL-1028 JAL-674 hooks to call external processing... tree | commitdiff
2012-12-04 jprocterJAL-1028 tidy and refactor external processing and... tree | commitdiff
2012-11-19 jprocterbugfix tree | commitdiff
2012-11-17 jprocterreturn annotated rna sequences from rnaml returned... tree | commitdiff
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