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[jalview.git] / src / jalview / analysis / AlignmentSorter.java

2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	JAL-2574 preparation for Sequence.findFeatures(col1...	blob \| commitdiff \| diff to current
2017-05-23	gmungoc	JAL-2490 find features for export as GFF, JAL-2548...	blob \| commitdiff \| diff to current
2017-05-22	gmungoc	JAL-2544 check feature overlaps selection region	blob \| commitdiff \| diff to current
2017-05-19	gmungoc	JAL-2544 only include features in selected columns...	blob \| commitdiff \| diff to current
2017-05-19	gmungoc	JAL-2490 performant lookup of features for sorting	blob \| commitdiff \| diff to current
2017-05-19	gmungoc	JAL-2505 unit test for sort by feature density, Javadoc	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2490 initial unit tests prior to refactoring	blob \| commitdiff \| diff to current
2017-03-24	gmungoc	JAL-838 move two callers off Comparison.PID and depreca...	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-02-12	gmungoc	JAL-2008 updates for String[] to List<String> change	blob \| commitdiff \| diff to current
2016-02-04	gmungoc	JAL-2005 added (stable) sort methods parameterised by	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-07-23	Jim Procter	JAL-1819 use Float.isNaN() to check for NaNs!	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	patch for JAL-935 - warning messages raised when alignm...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-14	jprocter	fix order/reverse order issue for sortByFeature	blob \| commitdiff \| diff to current
2009-08-21	jprocter	new sortbyPID for specific start/end region	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-12-19	jprocter	sort by length	blob \| commitdiff \| diff to current
2008-12-15	jprocter	temporary fix and note about null feature group mucking...	blob \| commitdiff \| diff to current
2008-12-08	jprocter	output average score to stdout	blob \| commitdiff \| diff to current
2008-12-08	jprocter	new sort functions for ordering sequence by annotated...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2007-11-16	jprocter	todo for sortbyPID operating on current selection rathe...	blob \| commitdiff \| diff to current
2007-04-26	jprocter	added 'sort by sequence associated annotation score'	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	sequence is char []	blob \| commitdiff \| diff to current
2006-11-09	amwaterhouse	1.1 compatible	blob \| commitdiff \| diff to current
2006-11-07	amwaterhouse	hidden seqs and setOrder bug fixed	blob \| commitdiff \| diff to current
2006-10-26	amwaterhouse	Sequences may be hidden, not in this aligment	blob \| commitdiff \| diff to current
2006-10-24	amwaterhouse	setOrder is public	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-07-18	amwaterhouse	Works on strings, not seqs	blob \| commitdiff \| diff to current
2006-07-12	amwaterhouse	sequences are private in SequenceGroup	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-16	amwaterhouse	Sort Groups modified	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-30	jprocter	Changed sortByPID to use the gapped PID function.	blob \| commitdiff \| diff to current
2005-05-24	jprocter	several ordering bug fixes.	blob \| commitdiff \| diff to current
2005-05-22	jprocter	Added alignment ordering option to 'Sort by' and implem...	blob \| commitdiff \| diff to current
2005-05-20	jprocter	Various sort methods added and bugs fixed (coping with...	blob \| commitdiff \| diff to current
2004-12-14	amwaterhouse	Choosing sort again reverses the sort order	blob \| commitdiff \| diff to current
2004-11-02	amwaterhouse	Jalview Imported Sources start	blob \| commitdiff \| diff to current

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