Merge remote-tracking branch 'origin/tasks/JAL-3035_remove_dasobert_dependency' into...
[jalview.git] / src / jalview / analysis / AlignmentSorter.java
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1...
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548...
2017-05-22 gmungocJAL-2544 check feature overlaps selection region
2017-05-19 gmungocJAL-2544 only include features in selected columns...
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca...
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-02-12 gmungocJAL-2008 updates for String[] to List<String> change
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs!
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-06-13 jprocterjavatidy
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-16 jprocterpatch for JAL-935 - warning messages raised when alignm...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2010-04-14 jprocterfix order/reverse order issue for sortByFeature
2009-08-21 jprocternew sortbyPID for specific start/end region
2009-06-08 jprocterapply gpl development license
2008-12-19 jproctersort by length
2008-12-15 jproctertemporary fix and note about null feature group mucking...
2008-12-08 jprocteroutput average score to stdout
2008-12-08 jprocternew sort functions for ordering sequence by annotated...
2008-09-04 jproctermerge from 2_4_Release branch
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe...
2007-04-26 jprocteradded 'sort by sequence associated annotation score'
2007-02-07 amwaterhouseFormatting
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-12-05 amwaterhousesequence is char []
2006-11-09 amwaterhouse1.1 compatible
2006-11-07 amwaterhousehidden seqs and setOrder bug fixed
2006-10-26 amwaterhouseSequences may be hidden, not in this aligment
2006-10-24 amwaterhousesetOrder is public
2006-08-21 amwaterhouseheader updated
2006-07-18 amwaterhouseWorks on strings, not seqs
2006-07-12 amwaterhousesequences are private in SequenceGroup
2005-06-30 amwaterhouseFormatting changes
2005-06-16 amwaterhouseSort Groups modified
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-30 jprocterChanged sortByPID to use the gapped PID function.
2005-05-24 jprocterseveral ordering bug fixes.
2005-05-22 jprocterAdded alignment ordering option to 'Sort by' and implem...
2005-05-20 jprocterVarious sort methods added and bugs fixed (coping with...
2004-12-14 amwaterhouseChoosing sort again reverses the sort order
2004-11-02 amwaterhouseJalview Imported Sources start