git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅ next
Merge remote-tracking branch 'origin/develop' into features/JAL-2316
[jalview.git]
/
src
/
jalview
/
analysis
/
Conservation.java
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
blob
|
commitdiff
2016-12-16
gmungoc
JAL-1705 JAL-98 use SortedMap as more accurate type...
blob
|
commitdiff
|
diff to current
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
blob
|
commitdiff
|
diff to current
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
blob
|
commitdiff
|
diff to current
2016-11-02
gmungoc
JAL-98 wording "negatively conserved" now "absence...
blob
|
commitdiff
|
diff to current
2016-11-01
gmungoc
Conservation now using ResidueCount; tests added
blob
|
commitdiff
|
diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
blob
|
commitdiff
|
diff to current
2016-10-06
gmungoc
Merge branch 'develop' into bug/JAL-98consensusMemory
blob
|
commitdiff
|
diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
blob
|
commitdiff
|
diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
blob
|
commitdiff
|
diff to current
2016-09-26
gmungoc
JAL-98 bug fix, string optimisation, sorted AA properties
blob
|
commitdiff
|
diff to current
2016-09-23
gmungoc
JAL-98 use SparseIntArray (wip)
blob
|
commitdiff
|
diff to current
2016-09-22
gmungoc
JAL-1421 use declared type of ResidueProperties.propHash
blob
|
commitdiff
|
diff to current
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
blob
|
commitdiff
|
diff to current
2016-09-20
gmungoc
JAL-1306 calculate Quality also when Conservation not...
blob
|
commitdiff
|
diff to current
2016-07-18
Jim Procter
JAL-2145 improvement: ensure conservation calculation...
blob
|
commitdiff
|
diff to current
2016-05-26
gmungoc
JAL-1797 non-case-sensitive counting of residues /...
blob
|
commitdiff
|
diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
blob
|
commitdiff
|
diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
blob
|
commitdiff
|
diff to current
2015-08-10
Jim Procter
JAL-736 relocate group associated conservation symbols...
blob
|
commitdiff
|
diff to current
2015-08-10
Jim Procter
JAL-736 source formatting
blob
|
commitdiff
|
diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
blob
|
commitdiff
|
diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
blob
|
commitdiff
|
diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
blob
|
commitdiff
|
diff to current
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
blob
|
commitdiff
|
diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
blob
|
commitdiff
|
diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
blob
|
commitdiff
|
diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
blob
|
commitdiff
|
diff to current
2014-04-21
Jim Procter
JAL-736 hack to show the conserved property values...
blob
|
commitdiff
|
diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
blob
|
commitdiff
|
diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
blob
|
commitdiff
|
diff to current
2012-10-03
jprocter
formatting
blob
|
commitdiff
|
diff to current
2011-10-21
jprocter
static convenience methods for constructing and calcula...
blob
|
commitdiff
|
diff to current
2011-10-21
jprocter
use List rather than Vector
blob
|
commitdiff
|
diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
blob
|
commitdiff
|
diff to current
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
blob
|
commitdiff
|
diff to current
2011-09-27
jprocter
apply version 2.7 copyright
blob
|
commitdiff
|
diff to current
2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
blob
|
commitdiff
|
diff to current
2011-02-18
jprocter
fix for occasional race conditions
blob
|
commitdiff
|
diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
blob
|
commitdiff
|
diff to current
2010-04-30
jprocter
jalview 2.5 release banner
blob
|
commitdiff
|
diff to current
2009-08-21
jprocter
1.1 compatibility
blob
|
commitdiff
|
diff to current
2009-08-21
jprocter
start/stop for per-group consensus calculation
blob
|
commitdiff
|
diff to current
2009-07-24
jprocter
complete alignment annotation row procedure
blob
|
commitdiff
|
diff to current
2009-06-08
jprocter
apply gpl development license
blob
|
commitdiff
|
diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
blob
|
commitdiff
|
diff to current
2008-04-10
jprocter
quick fix for conservation calculation when residue...
blob
|
commitdiff
|
diff to current
2007-02-07
amwaterhouse
Formatting
blob
|
commitdiff
|
diff to current
2007-01-30
amwaterhouse
Any character non aa or nucleotide is a space
blob
|
commitdiff
|
diff to current
2006-12-14
amwaterhouse
one less cast
blob
|
commitdiff
|
diff to current
2006-12-05
amwaterhouse
sequence is char []
blob
|
commitdiff
|
diff to current
2006-11-07
amwaterhouse
warning note added to consequence
blob
|
commitdiff
|
diff to current
2006-11-06
amwaterhouse
If start is not zero, we need to put -- at the start
blob
|
commitdiff
|
diff to current
2006-10-26
amwaterhouse
Error message changed
blob
|
commitdiff
|
diff to current
2006-10-11
jprocter
fixes exception (array index out of bounds - due to...
blob
|
commitdiff
|
diff to current
2006-10-10
amwaterhouse
Optimized
blob
|
commitdiff
|
diff to current
2006-08-21
amwaterhouse
header updated
blob
|
commitdiff
|
diff to current
2006-04-10
amwaterhouse
dont need to set - to -
blob
|
commitdiff
|
diff to current
2006-04-07
amwaterhouse
Set all gaps to - symbol
blob
|
commitdiff
|
diff to current
2005-08-18
amwaterhouse
Character methods don't exist in java 1.1
blob
|
commitdiff
|
diff to current
2005-08-18
jprocter
various case sensitivity bugs fixed in residue comparis...
blob
|
commitdiff
|
diff to current
2005-08-15
amwaterhouse
Declare variables outside loops
blob
|
commitdiff
|
diff to current
2005-06-30
amwaterhouse
Formatting changes
blob
|
commitdiff
|
diff to current
2005-06-08
amwaterhouse
Formatted source
blob
|
commitdiff
|
diff to current
2005-06-08
amwaterhouse
GPL license added
blob
|
commitdiff
|
diff to current
2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
blob
|
commitdiff
|
diff to current
2005-05-03
amwaterhouse
1.1 compatible
blob
|
commitdiff
|
diff to current
2005-04-11
jprocter
added the alignment quality calculation from the old...
blob
|
commitdiff
|
diff to current
2005-04-08
jprocter
remember: do not check in quick bug fixes that you...
blob
|
commitdiff
|
diff to current
2005-04-08
jprocter
Alignment quality with funky coloured histograms.
blob
|
commitdiff
|
diff to current
2005-03-23
amwaterhouse
drawableSequence removed
blob
|
commitdiff
|
diff to current
2004-12-15
amwaterhouse
isGap method added to utils
blob
|
commitdiff
|
diff to current
2004-12-14
amwaterhouse
Hastable is not used anywhere
blob
|
commitdiff
|
diff to current
2004-12-14
amwaterhouse
Hashtable size must allow for total-start
blob
|
commitdiff
|
diff to current
2004-11-16
amwaterhouse
Removed spaces
blob
|
commitdiff
|
diff to current
2004-11-02
amwaterhouse
Jalview Imported Sources
start
blob
|
commitdiff
|
diff to current
git://source.jalview.org / jalview.git / history