git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅ next
JAL-2069 typo
[jalview.git]
/
src
/
jalview
/
analysis
/
Dna.java
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
blob
|
commitdiff
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
blob
|
commitdiff
|
diff to current
2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
blob
|
commitdiff
|
diff to current
2017-10-04
gmungoc
JAL-2738 match consequence "Allele" to VCF allele;...
blob
|
commitdiff
|
diff to current
2017-10-03
kiramt
JAL-2674 testing
blob
|
commitdiff
|
diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
blob
|
commitdiff
|
diff to current
2017-09-29
kiramt
JAL-2674 finish with iterators for now
blob
|
commitdiff
|
diff to current
2017-09-28
kiramt
JAL-2647 more iterators
blob
|
commitdiff
|
diff to current
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
blob
|
commitdiff
|
diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
blob
|
commitdiff
|
diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
blob
|
commitdiff
|
diff to current
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
blob
|
commitdiff
|
diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
blob
|
commitdiff
|
diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
blob
|
commitdiff
|
diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
blob
|
commitdiff
|
diff to current
2016-07-19
gmungoc
JAL-391 corrected handling of gapped sequences
blob
|
commitdiff
|
diff to current
2016-06-19
Jim Procter
JAL-2110 JAL-2131 JAL-1765 remove reference to jalview...
blob
|
commitdiff
|
diff to current
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
blob
|
commitdiff
|
diff to current
2015-12-22
gmungoc
JAL-391 new Calculate options to Reverse, Reverse Compl...
blob
|
commitdiff
|
diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
blob
|
commitdiff
|
diff to current
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
blob
|
commitdiff
|
diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
blob
|
commitdiff
|
diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
blob
|
commitdiff
|
diff to current
2015-09-07
gmungoc
JAL-1636 translate stop codon as '*', mouseover * as...
blob
|
commitdiff
|
diff to current
2015-03-30
gmungoc
JAL-1264 remove broken applet build dependencies
blob
|
commitdiff
|
diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
blob
|
commitdiff
|
diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
blob
|
commitdiff
|
diff to current
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
blob
|
commitdiff
|
diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
blob
|
commitdiff
|
diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
blob
|
commitdiff
|
diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
blob
|
commitdiff
|
diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
blob
|
commitdiff
|
diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
blob
|
commitdiff
|
diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
blob
|
commitdiff
|
diff to current
2013-06-17
Jim Procter
JAL-1035 option to allow 'STOP' codon to translate...
blob
|
commitdiff
|
diff to current
2013-06-17
Jim Procter
JAL-1312 rewrite of code for first reported exception...
blob
|
commitdiff
|
diff to current
2013-06-17
Jim Procter
JAL-1318 - route warnings to stderr (need to find a...
blob
|
commitdiff
|
diff to current
2013-06-17
Jim Procter
JAL-1318 avoid failure if SequenceI objects don't have...
blob
|
commitdiff
|
diff to current
2013-06-17
Jim Procter
JAL-966 avoid using java.util.Vector
blob
|
commitdiff
|
diff to current
2012-11-08
jprocter
tidy imports
blob
|
commitdiff
|
diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
blob
|
commitdiff
|
diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
blob
|
commitdiff
|
diff to current
2011-09-27
jprocter
apply version 2.7 copyright
blob
|
commitdiff
|
diff to current
2010-09-23
jprocter
apply jalview code style
blob
|
commitdiff
|
diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
blob
|
commitdiff
|
diff to current
2010-04-30
jprocter
jalview 2.5 release banner
blob
|
commitdiff
|
diff to current
2009-06-24
jprocter
take the average of the three consecutive codon sites...
blob
|
commitdiff
|
diff to current
2009-06-08
jprocter
apply gpl development license
blob
|
commitdiff
|
diff to current
2008-11-12
jprocter
minor translation bug
blob
|
commitdiff
|
diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
blob
|
commitdiff
|
diff to current
2007-12-21
jprocter
further bugfix and annotation transfer for dna/protein...
blob
|
commitdiff
|
diff to current
2007-07-13
jprocter
bugfixes, partially working code for translation using...
blob
|
commitdiff
|
diff to current
2007-06-17
jprocter
fix aligned DNA codon translation bug(s) and generate...
blob
|
commitdiff
|
diff to current
2007-05-22
jprocter
fixed jalview 2.3 bug where gapped aligned codons were...
blob
|
commitdiff
|
diff to current
2007-04-25
jprocter
AlignmentAnnotation: added annotation score attribute...
blob
|
commitdiff
|
diff to current
2007-03-19
jprocter
translate aligned cDNA to aligned peptide
blob
|
commitdiff
|
diff to current