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Merge branch 'features/JAL-653_gffalignments' into features/JAL-653_JAL-1766_htslib_r...
[jalview.git]
/
src
/
jalview
/
api
/
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-15
tcofoegbu
JAL-1641 clean up
tree
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commitdiff
2015-06-15
tcofoegbu
JAL-1641 docs for ComplexAlignFile interface
tree
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
tree
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commitdiff
2015-06-10
tcofoegbu
JAL-1641 updated applet version
tree
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1482 refactor setTableData to more sensible name...
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
tree
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commitdiff
2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
tree
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commitdiff
2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
tree
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commitdiff
2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 hasHiddenRows is now an interface method
tree
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commitdiff
2015-01-23
Jim Procter
JAL-969 javadoc and mark interface overrides for clarity
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-20
Charles Ofoegbu
clean up
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commitdiff
2015-01-20
Charles Ofoegbu
clean up
tree
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commitdiff
2015-01-20
Charles Ofoegbu
basic house keeping
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commitdiff
2015-01-13
Charles Ofoegbu
Merge branch 'features/JAL-1553_select-columns-by-annot...
tree
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commitdiff
2015-01-13
Charles Ofoegbu
Refactored AnnotationColumnChoser and AnnotationColorCh...
tree
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commitdiff
2015-01-09
Jim Procter
Merge branch 'JAL-1372_referenceseq' into feature_29...
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-06
gmungoc
JAL-1588 refactoring prior to 'save Chimera project'
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-05
gmungoc
JAL-1609 refactored colour by sequence command, now...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-966 promote getName to an api method
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-1486 JAL-535 refactor code for trimming alignment...
tree
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commitdiff
2014-09-12
j.procter@dundee...
JAL-535 tidy interface definition and documentation
tree
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commitdiff
2014-08-08
j.procter@dundee...
formatting/typo
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence featur...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 sort by feature score/density made first class...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 JAL-1104 method to pass operations for undo...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 abstract feature renderer model holds render...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
tree
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commitdiff
2014-08-08
j.procter@dundee...
JAL-1482 nascent feature settings model and controller...
tree
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commitdiff
2014-07-04
j.procter@dundee...
JAL-1333 more abstraction and refactoring and working...
tree
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commitdiff
2014-07-02
Jim Procter
formatting
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commitdiff
2014-07-02
Jim Procter
JAL-1333 JAL-1527 refactors to create core structure...
tree
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commitdiff
2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featu...
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 source formatting
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-05-23
Jim Procter
JAL-1445 extend functionality to select or toggle selec...
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-05-02
Jim Procter
Merge branch 'Release_2_8_1_Branch' into JAL-1372_refer...
tree
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commitdiff
2014-05-01
Jim Procter
JAL-961 store result of conservation analysis worker...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1483 interface to allow score model to be parameter...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-967 JAL-1482 new feature renderer api - needs more...
tree
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commitdiff
2014-04-21
Jim Procter
JAL-1473 refactor score matrices and tree score calcula...
tree
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commitdiff
2014-02-17
Jim Procter
JAL-1445 ported routine for selecting containing/non...
tree
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commitdiff
2014-02-17
Jim Procter
JAL-1445 expose columnSelection setter.
tree
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commitdiff
2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
tree
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commitdiff
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2013-10-11
Jim Procter
JAL-1385 expose core view model methods in interface
tree
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commitdiff
2013-10-07
Jim Procter
JAL-1385 JAL-535 refactor sequence colour settings...
tree
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commitdiff
2013-10-07
Jim Procter
JAL-1385 expose core view model methods in interface
tree
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commitdiff
2013-10-07
Jim Procter
JAL-1385 Alignment view controller logic implementation...
tree
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commitdiff
2013-08-30
Jim Procter
JAL-1370 JAL-1371 flags for display and colour of view...
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-09-24
jprocter
JAL-958 JAL-966 refactor group/alignment associated...
tree
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commitdiff
2012-08-29
jprocter
JAL-1155 fix panel length calculation for grouped graph...
tree
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commitdiff
2012-08-28
jprocter
remove contaminant imports
tree
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commitdiff
2012-06-19
jprocter
JAL-961 JAL-975 extend api to support removal of worker...
tree
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commitdiff
2012-06-15
jprocter
JAL-535 refactored core code from PCA viewer to viewmodel.
tree
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commitdiff
2012-06-12
jprocter
JAL-961, JAL-1115 - pending test to ensure only one...
tree
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commitdiff
2012-06-07
jprocter
javatidy
tree
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commitdiff
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
tree
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commitdiff
2011-11-03
jprocter
(JAL-812,JAL-811) - generic test for 'calculation invol...
tree
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commitdiff
2011-11-03
jprocter
(JAL-811) - workers hold references to generated annota...
tree
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commitdiff
2011-11-03
jprocter
(JAL-812) javadoc and api method to relayout annotation...
tree
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commitdiff
2011-10-28
jprocter
extend API
tree
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commitdiff
2011-10-27
jprocter
(JAL-961) methods for checking calculation status
tree
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commitdiff
2011-10-27
jprocter
(JAL-961) more calculation annotation and result object...
tree
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commitdiff
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
tree
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commitdiff
2011-10-21
jprocter
extend alignPanel api with OOMHandler call to raise...
tree
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commitdiff
2011-10-21
jprocter
Introduced new AlignCalcWorker/manager interface.
tree
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commitdiff
2011-10-18
jprocter
backout parts of the interface from another development...
tree
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commitdiff
2011-10-18
jprocter
(Jalview 3) refactored Graphics2D annotation rendering...
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-05-17
jprocter
interface for objects at root of a jalview session's
tree
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commitdiff
2011-02-17
jprocter
protype api
tree
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commitdiff
2010-09-23
jprocter
apply jalview code style
tree
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
tree
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commitdiff
2010-08-18
jprocter
code design comment
tree
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commitdiff
2010-08-18
jprocter
refactor to jalview.api methods
tree
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commitdiff
2010-06-29
jprocter
interfaces implemented by jalview renderers
tree
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commitdiff
2010-06-29
jprocter
proxy interface for structure viewers that jalview...
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commitdiff