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[jalview.git] / src / jalview / appletgui / AlignFrame.java

2017-01-19	gmungoc	JAL-2383 restore PID colour threshold from project...	blob \| commitdiff
2017-01-11	gmungoc	JAL-2344 FileFormats singleton for formats, FileFormatI...	blob \| commitdiff \| diff to current
2016-12-14	Jim Procter	Merge branch 'patch/JAL-2197_jpredforjnets' into develop	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	Distinguish text-only output formats and others (.jar...	blob \| commitdiff \| diff to current
2016-11-24	gmungoc	FileFormatI further tweaks, clean compile	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	JAL-2197 add jpredfile as alternative form of jnetfile...	blob \| commitdiff \| diff to current
2016-10-06	gmungoc	Merge branch 'develop' into task/JAL-2196pdbeProperties	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-10-05	gmungoc	Merge branch 'develop' into task/JAL-2196pdbeProperties	blob \| commitdiff \| diff to current
2016-09-19	gmungoc	JAL-2172 test and code updates for readonly selection...	blob \| commitdiff \| diff to current
2016-09-13	gmungoc	JAL-2196 refactor PDBEntry.getProperty,setProperty...	blob \| commitdiff \| diff to current
2016-08-30	gmungoc	Merge branch 'develop' into features/filetypeEnum	blob \| commitdiff \| diff to current
2016-08-24	gmungoc	JAL-1355 correct 'thereshold' to 'threshold' in message...	blob \| commitdiff \| diff to current
2016-07-19	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-07-18	gmungoc	JAL-2099 ensure initial setting of scaleAbove reaches...	blob \| commitdiff \| diff to current
2016-07-12	gmungoc	FileFormat enum wip changes	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-05-10	gmungoc	Merge branch 'develop' into features/JAL-1956_featureStyles	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 make Escape/select/deselect operations not...	blob \| commitdiff \| diff to current
2016-02-24	gmungoc	JAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles	blob \| commitdiff \| diff to current
2016-01-28	gmungoc	Merge branch 'develop' into JAL-1705_trialMerge	blob \| commitdiff \| diff to current
2016-01-11	gmungoc	JAL-1989 additional ways to 'mirror' show/hide columns...	blob \| commitdiff \| diff to current
2016-01-11	gmungoc	JAL-1989 more unit tests and encapsulation for ColumnSe...	blob \| commitdiff \| diff to current
2015-12-09	Jim Procter	JAL-1982 hotfix to prevent NPE with applet launch on...	blob \| commitdiff \| diff to current
2015-11-21	gmungoc	JAL-653 JAL-1968 FeaturesFile now handles Jalview or...	blob \| commitdiff \| diff to current
2015-10-22	gmungoc	JAL-1932 TrimRegionCommand bug fix, tests and purge...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-07	Jim Procter	JAL-1894 source formatting	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-28	gmungoc	JAL-1909 repaint complementary alignment panel after...	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-22	tcofoegbu	JAL-1774 house keeping	blob \| commitdiff \| diff to current
2015-09-21	tcofoegbu	merge	blob \| commitdiff \| diff to current
2015-09-21	tcofoegbu	JAL-1774 modifed warning dialog to use JVDialog rather...	blob \| commitdiff \| diff to current
2015-09-21	gmungoc	JAL-1152 set initial state of show alignment/sequence...	blob \| commitdiff \| diff to current
2015-09-18	tcofoegbu	JAL-1774 JAL-1506 revised implementaion for clear highl...	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1865 fixed so initial state of annotation sort...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-09	gmungoc	JAL-1619 update applet.currentAlignFrame on any menu...	blob \| commitdiff \| diff to current
2015-09-06	Jim Procter	JAL-1645 JAL-1355 UI/i18n: added missing messages,...	blob \| commitdiff \| diff to current
2015-09-03	Jim Procter	JAL-1680 JAL-1576 JAL-1233 all conservation and consens...	blob \| commitdiff \| diff to current
2015-08-24	gmungoc	remove mentions of non-functional RNAInteraction colour...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-07-08	gmungoc	JAL-1759 merge from develop	blob \| commitdiff \| diff to current
2015-07-06	gmungoc	JAL-1799 equivalent logic in applet	blob \| commitdiff \| diff to current
2015-07-01	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-29	gmungoc	JAL-1799 adjusted annotation height calculation	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	JAL-1759 updates for Jmol 14.2.14_25.06.11	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-19	Jim Procter	JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...	blob \| commitdiff \| diff to current
2015-06-18	Jim Procter	JAL-1780 JAL-653 moved AlignExportSettings reference...	blob \| commitdiff \| diff to current
2015-06-17	Jim Procter	Merge branch 'features/JAL-653_gffalignments' into...	blob \| commitdiff \| diff to current
2015-06-17	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments	blob \| commitdiff \| diff to current
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile	blob \| commitdiff \| diff to current
2015-06-12	tcofoegbu	JAL-1641 refactor	blob \| commitdiff \| diff to current
2015-06-10	tcofoegbu	JAL-1641 updated applet version	blob \| commitdiff \| diff to current
2015-06-05	tcofoegbu	JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...	blob \| commitdiff \| diff to current
2015-06-05	Jim Procter	JAL-1482 JAL-653 refactor feature file import code...	blob \| commitdiff \| diff to current
2015-06-01	tcofoegbu	JAL-1641 remove all refs/imports from gui package	blob \| commitdiff \| diff to current
2015-04-08	gmungoc	JAL-1691 applet SplitFrame scrolling; pull up of 5...	blob \| commitdiff \| diff to current
2015-04-02	gmungoc	JAL-1690 'scale protein as cDNA' options in Preferences...	blob \| commitdiff \| diff to current
2015-04-01	gmungoc	JAL-1264 reinstate Show annotations menu item	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-27	Jim Procter	JAL-1678 - patch to make sure we only compare positions...	blob \| commitdiff \| diff to current
2015-02-27	Jim Procter	fix for JAL-1678	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	Merge branch 'develop' into feature_29/JAL-1372_referen...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1551 JAL-962 formatting and code change ripples...	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1551 source code formatting	blob \| commitdiff \| diff to current
2015-01-23	Jim Procter	JAL-1628 drop getShowAnnotation accessor in favour...	blob \| commitdiff \| diff to current
2015-01-22	Charles Ofoegbu	JAL-1553 added applet support for the select-column...	blob \| commitdiff \| diff to current
2015-01-06	gmungoc	JAL-1588 refactoring prior to 'save Chimera project'	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-25	gmungoc	JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1482 feature renderer and manipulation code refacto...	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch	blob \| commitdiff \| diff to current
2014-05-27	Jim Procter	JAL-1508 make default font size 11pt for embedded menus...	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-05-02	Jim Procter	Merge branch 'JAL-1397' into develop	blob \| commitdiff \| diff to current
2014-05-01	Jim Procter	JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...	blob \| commitdiff \| diff to current
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