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Merge branch 'JAL-1397' into JAL-1372_referenceseq
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignFrame.java
2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
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commitdiff
2014-05-01
Jim Procter
fix for JAL-1495 - initialise menu entry from current...
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diff to current
2014-04-05
Jim Procter
Merge branch 'r281_JAL-1211' into Release_2_8_1_Branch
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diff to current
2014-04-04
Jim Procter
JAL-1211 - pick up site-defined defined window geometry...
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commitdiff
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diff to current
2014-04-04
Jim Procter
JAL-1335 typo and 'edit' action
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diff to current
2014-02-17
Jim Procter
JAL-535 interface for GUI state update methods that...
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diff to current
2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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diff to current
2014-01-29
Jim Procter
JAL-1432 natasha's name on applet author list
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2013-10-08
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_...
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2013-10-08
Jim Procter
JAL-1384 documentation and consistent ordering for...
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diff to current
2013-10-08
Jim Procter
JAL-1384 group/ungroup sequences with command/ctrl...
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diff to current
2013-10-07
Jim Procter
JAL-1385 refactor logic to AlignmentViewController
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commitdiff
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diff to current
2013-08-29
darolmar
i18n
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commitdiff
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diff to current
2013-08-14
Jim Procter
JAL-1354 replacement of bare strings in GUI dialogs...
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commitdiff
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diff to current
2012-11-08
jprocter
tidy imports
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commitdiff
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diff to current
2012-11-07
jprocter
JAL-957 manual update to applet authorlist - need to...
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-09-25
jprocter
JAL-1031 allow empty selections to pass through to...
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commitdiff
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diff to current
2012-09-24
jprocter
JAL-958 normalise logo menu options in applet
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commitdiff
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diff to current
2012-06-13
jprocter
javatidy
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diff to current
2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
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commitdiff
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diff to current
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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commitdiff
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diff to current
2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
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commitdiff
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diff to current
2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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commitdiff
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diff to current
2012-05-24
jprocter
patch for occasional NPE when applet is quit
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commitdiff
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diff to current
2012-05-23
jprocter
JAL-1078 - extend applet cut'n'paste features/annotatio...
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commitdiff
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diff to current
2012-05-23
jprocter
JAL-1067, JAL-1105 - refactor parser to fit Jalview...
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diff to current
2012-05-23
jprocter
todo JAL-1104 : functions to refactor
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diff to current
2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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diff to current
2011-10-28
jprocter
(JAL-885) RNA helix and purine pyrimidine colouring...
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diff to current
2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
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diff to current
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
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diff to current
2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
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diff to current
2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
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commitdiff
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diff to current
2011-08-30
jprocter
patch for JAL-729 - NPE avoided and cut and paste impor...
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commitdiff
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diff to current
2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
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diff to current
2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
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diff to current
2011-07-05
jprocter
Revert "Revert "needed for linkedapplets_ng.html (JAL...
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diff to current
2011-07-05
jprocter
Revert "needed for linkedapplets_ng.html (JAL-859,JAL...
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diff to current
2011-07-05
jprocter
needed for linkedapplets_ng.html (JAL-859,JAL-469)
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commitdiff
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diff to current
2011-07-05
jprocter
whole frame should be validated.
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commitdiff
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diff to current
2011-06-30
jprocter
set initial annotation panel height appropriately ...
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commitdiff
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diff to current
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
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diff to current
2011-05-05
jprocter
javadoc and informative error message when external...
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diff to current
2011-02-14
jprocter
JAL-769
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diff to current
2011-02-14
jprocter
JAL-621 and JAL-564
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commitdiff
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diff to current
2011-02-04
jprocter
group associated annotation and logos JAL-516 JAL-759
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diff to current
2011-01-21
jprocter
relaxed ID matching parameter JAL-753 and sortBy JAL-754
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diff to current
2011-01-17
jprocter
JAL-750 and JAL-451
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commitdiff
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diff to current
2011-01-12
jprocter
javascript callback for selection, mousover, and functi...
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diff to current
2010-12-14
jprocter
refactored and patched for JAL-721
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commitdiff
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diff to current
2010-09-23
jprocter
revised author list
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commitdiff
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diff to current
2010-09-23
jprocter
apply jalview code style
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-08-31
jprocter
notes re JAL-623 and JAL-583, new api methods for addin...
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commitdiff
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diff to current
2010-08-25
jprocter
excluded methods related to broken Jmol applet binding...
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commitdiff
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diff to current
2010-08-20
jprocter
refactored external structure viewer binding API calls...
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commitdiff
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diff to current
2010-07-21
jprocter
URLs that begin with javascript: are opened in the...
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diff to current
2010-06-29
jprocter
new ajax api methods for linking existing jmol viewers...
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diff to current
2010-06-11
jprocter
patched for JAL-531 - only display full symbol distribu...
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commitdiff
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diff to current
2010-06-06
jprocter
patch for JAL-542
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commitdiff
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diff to current
2010-04-30
jprocter
sort by length
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-29
jprocter
isAligned assertion (bug 0008144)
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commitdiff
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diff to current
2010-04-29
jprocter
hide/show selected region menu entries and key bindings
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commitdiff
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diff to current
2010-04-28
jprocter
make groups from selection
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commitdiff
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diff to current
2010-04-26
jprocter
build date output in the About box, and build details...
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commitdiff
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diff to current
2010-04-23
jprocter
refresh table method
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commitdiff
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diff to current
2010-04-16
jprocter
export graduated feature colors
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commitdiff
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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diff to current
2009-03-17
jprocter
sortbytree parameter added and undo re-instated for...
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diff to current
2009-02-06
jprocter
showUnconserved and updated reference
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2008-11-12
jprocter
automatic scrolling option added to view
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-06-26
jprocter
added URLEncoder.encode to properly escape CGI encoded...
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diff to current
2008-04-21
jprocter
centrecolumnlabels format menu item and parameter added...
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diff to current
2007-11-16
jprocter
todo for sortbyPID operating on current selection rathe...
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diff to current
2007-10-27
jprocter
must do any modification to menus before they are embed...
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commitdiff
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diff to current
2007-10-27
jprocter
refactored embedded menu machinery
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commitdiff
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diff to current
2007-10-26
jprocter
add mac dependent use of embedded menu bar rather than...
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commitdiff
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diff to current
2007-10-10
jprocter
featureGroup show/hide and newView methods for applet...
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diff to current
2007-08-01
jprocter
added tree as an applet to application servlet parameter
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commitdiff
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diff to current
2007-05-02
jprocter
refactored do and undo() method to take array of alignm...
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diff to current
2007-04-27
amwaterhouse
Alignment properties available
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commitdiff
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diff to current
2007-04-26
amwaterhouse
Alignment Properties required for annotation file
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diff to current
2007-04-25
amwaterhouse
Export annotations with properties
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commitdiff
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diff to current
2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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commitdiff
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diff to current
2007-03-23
amwaterhouse
slide is transparent to hidden columns
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commitdiff
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diff to current
2007-02-27
amwaterhouse
Use paintAlignment
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commitdiff
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diff to current
2007-02-07
amwaterhouse
Formatting
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commitdiff
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diff to current
2007-02-01
amwaterhouse
removed deprecated bits
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commitdiff
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diff to current
2007-01-31
amwaterhouse
Dont export annotations if not visible
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commitdiff
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diff to current
2007-01-30
amwaterhouse
Output groups in annotation file
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commitdiff
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diff to current
2007-01-29
amwaterhouse
New view copies annotations across
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commitdiff
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diff to current
2007-01-25
amwaterhouse
Annotations move when full alignment edited
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