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[jalview.git] / src / jalview / appletgui / AppletJmol.java

2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff
2017-10-10	Jim Procter	Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...	blob \| commitdiff
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-20	gmungoc	JAL-2360 ColourSchemes holds configured schemes, AlignF...	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-14	gmungoc	Merge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties	blob \| commitdiff \| diff to current
2016-10-11	gmungoc	JAL-2233 reverted changes to Jmol logging levels	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	gmungoc	Merge branch 'develop' into task/JAL-2196pdbeProperties	blob \| commitdiff \| diff to current
2016-09-27	gmungoc	JAL-2233 less verbose logging for Jmol	blob \| commitdiff \| diff to current
2016-09-13	gmungoc	JAL-2196 refactor PDBEntry.getProperty,setProperty...	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2016-03-22	tcofoegbu	JAL-1919 code improvement to make PDB sequence fetcher...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-26	gmungoc	JAL-1759 added check for null (console 'history')	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1759 unused JmolPopup removed, code tidy for generics	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	JAL-1759 changed to non-deprecated Viewer.renderScreenI...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-06	gmungoc	JAL-1588 refactoring prior to 'save Chimera project'	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-07-02	Jim Procter	JAL-1333 JAL-1527 refactors to create core structure...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-04-25	jprocter	JAL-824 - ensure Jmol colouring is a radio button	blob \| commitdiff \| diff to current
2011-04-22	jprocter	option for enabling Jmol colouring mode JAL-824	blob \| commitdiff \| diff to current
2011-02-18	jprocter	call to release any explicit event handler references	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-14	jprocter	streamlined app and applet jmol console + event handlin...	blob \| commitdiff \| diff to current
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for addin...	blob \| commitdiff \| diff to current
2010-08-27	jprocter	revised sequence/structure binding so one structure...	blob \| commitdiff \| diff to current
2010-08-25	jprocter	correct initing of JmolViewer to avoid security excepti...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	complete the sequence-structure mapping details. *...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	improved debug output when Jmol viewer creation fails	blob \| commitdiff \| diff to current
2010-08-18	jprocter	refactor to abstract jmol/jalview binding and applet...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	upgrading structure/sequence binding so that a structur...	blob \| commitdiff \| diff to current
2010-06-17	jprocter	remove source annotations	blob \| commitdiff \| diff to current
2010-06-17	jprocter	update to Jmol series 12 (JAL-582)	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-11-06	jprocter	better formed generic select residue X expression	blob \| commitdiff \| diff to current
2009-10-30	jprocter	na pdb: highlight any part of a residue, not just the...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-04-10	jprocter	bug fix for Features/Annotations file parameter parsing...	blob \| commitdiff \| diff to current
2007-12-18	jprocter	incorrect colour-by-sequence when gaps are present...	blob \| commitdiff \| diff to current
2007-10-27	jprocter	enabled platform dependent embedding of menuBar with...	blob \| commitdiff \| diff to current
2007-05-22	amwaterhouse	DONT SET PICKING LABEL	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	set picking label	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	instant update when seq colour is pressed	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	must specify .CA	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	small sphere for alpha carbon	blob \| commitdiff \| diff to current
2007-05-07	amwaterhouse	Dont use gold colouring for highlight	blob \| commitdiff \| diff to current
2007-05-04	amwaterhouse	lastCommand check	blob \| commitdiff \| diff to current
2007-05-03	amwaterhouse	optimize repaints	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	use jalviewLite to addFrame	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	blob \| commitdiff \| diff to current
2007-04-27	amwaterhouse	Make sure sequence is in mouse over alignment	blob \| commitdiff \| diff to current
2007-04-23	amwaterhouse	getColour method added	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Remove system.out	blob \| commitdiff \| diff to current
2007-04-11	amwaterhouse	Amend features/annotations in applet	blob \| commitdiff \| diff to current
2007-04-02	jprocter	featuresAdded method introduced for consistency with...	blob \| commitdiff \| diff to current
2007-03-26	amwaterhouse	Jalview colour schemes added	blob \| commitdiff \| diff to current
2007-03-23	amwaterhouse	updates to console	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	jmol added	blob \| commitdiff \| diff to current

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