JAL-2523 start of refactoring...
[jalview.git] / src / jalview / appletgui / AppletJmol.java
2017-08-16 Jim ProcterJAL-2418 source formatting
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF...
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-07-11 gmungocfile format enum wip changes
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-26 gmungocJAL-1759 added check for null (console 'history')
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-09-23 darolmarJAL-1355
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-08-29 darolmari18n
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-07-25 janengelhardtStart merging of Laurens Code
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-04-25 jprocterJAL-824 - ensure Jmol colouring is a radio button
2011-04-22 jprocteroption for enabling Jmol colouring mode JAL-824
2011-02-18 jproctercall to release any explicit event handler references
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-09-14 jprocterstreamlined app and applet jmol console + event handlin...
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin...
2010-08-27 jprocterrevised sequence/structure binding so one structure...
2010-08-25 jproctercorrect initing of JmolViewer to avoid security excepti...
2010-08-20 jproctercomplete the sequence-structure mapping details. *...
2010-08-20 jprocterimproved debug output when Jmol viewer creation fails
2010-08-18 jprocterrefactor to abstract jmol/jalview binding and applet...
2010-06-29 jprocterupgrading structure/sequence binding so that a structur...
2010-06-17 jprocterremove source annotations
2010-06-17 jprocterupdate to Jmol series 12 (JAL-582)
2010-04-30 jprocterjalview 2.5 release banner
2009-11-06 jprocterbetter formed generic select residue X expression
2009-10-30 jprocterna pdb: highlight any part of a residue, not just the...
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2007-12-18 jprocterincorrect colour-by-sequence when gaps are present...
2007-10-27 jprocterenabled platform dependent embedding of menuBar with...
2007-05-22 amwaterhouseDONT SET PICKING LABEL
2007-05-08 amwaterhouseset picking label
2007-05-08 amwaterhouseinstant update when seq colour is pressed
2007-05-08 amwaterhousemust specify .CA
2007-05-08 amwaterhousesmall sphere for alpha carbon
2007-05-07 amwaterhouseDont use gold colouring for highlight
2007-05-04 amwaterhouselastCommand check
2007-05-03 amwaterhouseoptimize repaints
2007-05-01 amwaterhouseuse jalviewLite to addFrame
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-04-27 amwaterhouseMake sure sequence is in mouse over alignment
2007-04-23 amwaterhousegetColour method added
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct...
2007-04-17 amwaterhouseRemove system.out
2007-04-11 amwaterhouseAmend features/annotations in applet
2007-04-02 jprocterfeaturesAdded method introduced for consistency with...
2007-03-26 amwaterhouseJalview colour schemes added
2007-03-23 amwaterhouseupdates to console
2007-02-27 amwaterhousejmol added