temp push
[jalview.git] / src / jalview / appletgui / SeqCanvas.java
2020-04-09 BobHansontemp push JAL-3253_applet_omnibus-BH
2019-04-18 hansonradds an explicit clearing of the SeqCanvas fastPaint...
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth
2018-02-05 kiramtJAL-2759 Rename getBoundedStartIterator
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls...
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration
2017-11-15 kiramtJAL-2831 ported to applet
2017-10-13 kiramtJAL-2774 Created single event for update to both start...
2017-10-03 kiramtJAL-2674 testing
2017-10-03 kiramtJAL-2674 working refactor of drawPanel iteration
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 kiramtJAL-2674 2nd attempt to refactor seqcanvas drawing...
2017-09-29 kiramtJAL=2674 Removed getHiddenColumnsCopy
2017-09-29 kiramtJAL-2674 reverted attempt at visible regions iterator
2017-09-28 kiramtJAL-2647 more iterators
2017-09-26 kiramtJAL-2647 Added iterators and associated tests and bench...
2017-09-22 kiramtJAL-2674 add bounds to findHiddenRegionPositions
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-19 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment!
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin...
2017-06-30 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker
2017-06-28 kiramtJAL-2600 updates following review
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-21 gmungocJAL-2524 don't render up to a hidden marker beyond...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-08 kiramtJAL-2591 Refactor HiddenColumns to use ArrayList instea...
2017-06-08 kiramtJAL-2591 More HiddenColumns refactoring. Tests passing.
2017-06-07 kiramtJAL-2591 updated HiddenColumns::findHiddenRegionPositio...
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-15 kiramtJAL-2491 Tidies
2017-05-11 kiramtJAL-2491 First port to applet
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped...
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column...
2016-04-07 Jim ProcterJAL-1722 fix: don’t draw visible regions outside viewpo...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-1551 crlf changes
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Charles OfoegbuJAL-1553 fixed null pointer exception thrown in SeqCanv...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-07-05 jprocterRevert "partial patch for JAL-411 - text rendered above...
2011-07-05 jprocterpartial patch for JAL-411 - text rendered above features
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-01-30 amwaterhouseDraw helices correctly
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-11-21 amwaterhouseSeq may be null if hide has occurred
2006-11-15 amwaterhouseIdMask must be Max seq end, not seq width
2006-11-14 amwaterhouseCommands, history, consensus, refresh updated
2006-09-18 amwaterhouseDraw hidden column marker correctly
2006-08-21 amwaterhouseheader updated
2006-08-10 amwaterhousegroup.getSize should be ab.alignment.getGroups
2006-08-08 amwaterhouseApplet has hidden regions
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