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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git] / src / jalview / bin / Jalview.java
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... commit | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff
2019-04-05 hansonrfixes for Jalview command-line URI code commit | commitdiff
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... commit | commitdiff
2019-04-03 hansonrj2sNative clean-up. Fixes problem with second try of... commit | commitdiff
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... commit | commitdiff
2019-03-27 gmungocJAL-3032 small formatting and isJS() tidy commit | commitdiff
2019-03-27 hansonrisJS cleanup commit | commitdiff
2019-03-13 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff
2019-03-06 gmungocJAL-3035 more das bits removed commit | commitdiff
2019-03-06 Jim ProcterJAL-3208 re-enable the setprop CLI arg, but only in... commit | commitdiff
2019-02-28 gmungocJAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB commit | commitdiff
2019-02-25 gmungocJAL-3032 Jalview (as JS) parse query params to main... commit | commitdiff
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... commit | commitdiff
2019-01-21 hansonrisAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA... commit | commitdiff
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; commit | commitdiff
2019-01-11 hansonr(commented out but potentially useful) methods to tap... commit | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... commit | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification commit | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff
2018-09-05 Jim ProcterJAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings commit | commitdiff
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for... commit | commitdiff
2018-07-17 bsoaresJAL-3065 commit | commitdiff
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor commit | commitdiff
2018-06-27 hansonrJAL-3032 just the changes pulled already commit | commitdiff
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more ! commit | commitdiff
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... commit | commitdiff
2018-06-20 hansonrupdate of javajs package; adds org.apache.harmony,... commit | commitdiff
2018-05-09 Jim ProcterJAL-2976 fixed bad equivalence check and implemented... commit | commitdiff
2018-05-02 Jim ProcterJAL-2976 fallback to Vaqua for Macs that don’t work... commit | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo commit | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting commit | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch commit | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... commit | commitdiff
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test... commit | commitdiff
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... commit | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge commit | commitdiff
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ... commit | commitdiff
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap... commit | commitdiff
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli commit | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch commit | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... commit | commitdiff
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to... commit | commitdiff
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for... commit | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum commit | commitdiff
2016-08-08 gmungocJAL-2168 document '-nonews' parameter commit | commitdiff
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied commit | commitdiff
2016-07-11 gmungocfile format enum wip changes commit | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding commit | commitdiff
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into... commit | commitdiff
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop... commit | commitdiff
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy commit | commitdiff
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look... commit | commitdiff
2016-04-25 Jim ProcterJAL-2074 disable security manager at start up re: lopic... commit | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... commit | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 commit | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright commit | commitdiff
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch commit | commitdiff
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... commit | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff
2015-07-13 tcofoegbuJAL-1788 added help documentation for biojson commit | commitdiff
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations commit | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop commit | commitdiff
2015-07-06 tcofoegbuJAL-1769 fixed headless execution mode and created... commit | commitdiff
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi... commit | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... commit | commitdiff
2015-05-21 tcofoegbuJAL-1740 implemented auto-update of BioJsMSA, introduce... features/JAL-1740_BioJsAutoUpdater commit | commitdiff
2015-03-26 gmungocJAL-1688 compiler warnings removed commit | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff
2015-02-05 Charles Ofoegbumerge commit commit | commitdiff
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... commit | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 commit | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes commit | commitdiff
2014-12-08 Charles OfoegbuAdded annotation export configuration for Html export... commit | commitdiff
2014-12-05 Charles OfoegbuMerge branch 'features/JAL-1605_html-svg-export' into... commit | commitdiff
2014-12-05 Charles OfoegbuJAL-1605 added command line support for html export... commit | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff
2014-12-05 gmungocJAL-1614 flag 'protein' removed commit | commitdiff
2014-11-28 Jim ProcterJAL-1611 revise log level to reduce verbosity commit | commitdiff
2014-11-19 gmungocJAL-1342 new command-line parameter -jabaws <URL> commit | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff
2014-11-17 Charles Ofoegbucomand line support for svg generation commit | commitdiff
2014-09-23 darolmarJAL-1355 commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting commit | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 commit | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch commit | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header commit | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop commit | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices commit | commitdiff
2013-06-13 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2 commit | commitdiff
2013-06-13 Jim ProcterMerge branch 'JAL-1314_headlessFlag' into develop commit | commitdiff
2013-06-13 Jim ProcterJAL-1314 allow 'nogui' and 'headless' as synonyms for... commit | commitdiff
2012-12-07 jproctermenu for choosing between 'protein' and 'RNA' mode... commit | commitdiff
2012-11-15 jprocterMerge branch 'develop' into menard commit | commitdiff
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