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[jalview.git] / src / jalview / bin / JalviewLite.java

2015-08-24	gmungoc	JAL-845 error message on syserr if supplied files don...	blob \| commitdiff
2015-07-10	tcofoegbu	JAL-1759 code fix to enable testng ant task compile...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-04-28	gmungoc	JAL-1684 removed reflection from ViewStyle (to Junit...	blob \| commitdiff \| diff to current
2015-04-13	gmungoc	JAL-1695 parameter controls whether SplitFrame is enabled	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2015-01-28	Jim Procter	JAL-1565 automatically mark query sequence as the seque...	blob \| commitdiff \| diff to current
2015-01-18	Jim Procter	JAL-1628 employ new AnnotationFile reader method to...	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-11-19	Charles Ofoegbu	JAL-1522 included installation details in log output	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-674 register PDB IDs when ever they are resolved...	blob \| commitdiff \| diff to current
2014-10-30	Jim Procter	JAL-1551 format and tidy	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-28	Jim Procter	JAL-1507 bugfix	blob \| commitdiff \| diff to current
2014-05-27	Jim Procter	JAL-1507 added loop to throw dummy javascript calls...	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2013-08-14	Jim Procter	JAL-1354 replacement of bare strings in GUI dialogs...	blob \| commitdiff \| diff to current
2013-05-13	Jim Procter	JAL-1289 call oninit callback even if no alignment...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1078 - extend applet cut'n'paste features/annotatio...	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067, JAL-1105 - refactor parser to fit Jalview...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) todo test re refactoring and possible change...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	(JAL-965) new api methods to allow features to be loade...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	(JAL-962) rejig parameter processing order so groups...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-12	jprocter	JAL-927 ensure api method calls that affect GUI state...	blob \| commitdiff \| diff to current
2011-08-15	jprocter	JAL-904 added scrollToRow and scrollToColumn methods...	blob \| commitdiff \| diff to current
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resour...	blob \| commitdiff \| diff to current
2011-08-03	jprocter	refactored resolvetocodebase code and reused for resour...	blob \| commitdiff \| diff to current
2011-07-28	jprocter	added 'since 2.x notes to parameters'. User configurabl...	blob \| commitdiff \| diff to current
2011-07-22	jprocter	default parameter for colours in annotation shading...	blob \| commitdiff \| diff to current
2011-07-03	jprocter	extracted jalviewlite API calls as separate interface...	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-05-05	jprocter	improved javascript callback execution thread and provi...	blob \| commitdiff \| diff to current
2011-02-14	jprocter	JAL-621 - also renamed list of javascript handlers	blob \| commitdiff \| diff to current
2011-01-21	jprocter	extended mouseover message with absolute sequence posit...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	removed securityException caused by accessing class...	blob \| commitdiff \| diff to current
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	additional test - koders.com/java/fid4C9593FE80CE8AA811...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	warn user that no JS callbacks will work by default...	blob \| commitdiff \| diff to current
2011-01-17	jprocter	revised default separator string expression to avoid...	blob \| commitdiff \| diff to current
2011-01-12	jprocter	handlers with no specified alignframe broadcast events...	blob \| commitdiff \| diff to current
2011-01-12	jprocter	1.1 compat	blob \| commitdiff \| diff to current
2011-01-12	jprocter	javascript callback for selection, mousover, and functi...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-07	jprocter	fix for JAL-631	blob \| commitdiff \| diff to current
2010-09-02	jprocter	1.1 compatibility	blob \| commitdiff \| diff to current
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for addin...	blob \| commitdiff \| diff to current
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	blob \| commitdiff \| diff to current
2010-08-20	jprocter	refactored external structure viewer binding API calls...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	new ajax api methods for linking existing jmol viewers...	blob \| commitdiff \| diff to current
2010-06-18	jprocter	new jmol/pdb relates api calls	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-26	jprocter	build date output in the About box, and build details...	blob \| commitdiff \| diff to current
2010-04-23	jprocter	default value boolean parameter getter	blob \| commitdiff \| diff to current
2009-11-23	jprocter	initialise current and defaultAlignFrame and debug...	blob \| commitdiff \| diff to current
2009-11-13	jprocter	make fileparse errors easier to debug by dumping file...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-06-01	jprocter	better decoupling of data loading routines for AJAX	blob \| commitdiff \| diff to current
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	blob \| commitdiff \| diff to current
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-12	jprocter	added nojmol parameter to disable check for jmol	blob \| commitdiff \| diff to current
2008-08-05	jprocter	showbutton default is true	blob \| commitdiff \| diff to current
2008-08-04	jprocter	added 'showbutton' applet parameter	blob \| commitdiff \| diff to current
2008-05-26	jprocter	minor bugfix for case when PDB sequence strings are...	blob \| commitdiff \| diff to current
2008-04-10	jprocter	bug fix for Features/Annotations file parameter parsing...	blob \| commitdiff \| diff to current
2007-10-27	jprocter	windowclose handler now calls EmbmenuFrame garbage...	blob \| commitdiff \| diff to current
2007-10-26	jprocter	fixed applet API calls so they operate on the embedded...	blob \| commitdiff \| diff to current
2007-10-12	jprocter	added separator parameter with default of '\|' to contro...	blob \| commitdiff \| diff to current
2007-10-11	jprocter	remove conflict on javascript api	blob \| commitdiff \| diff to current
2007-10-11	jprocter	static debug flag controlling output of excessive info...	blob \| commitdiff \| diff to current
2007-10-10	jprocter	featureGroup show/hide and newView methods for applet...	blob \| commitdiff \| diff to current
2007-05-08	amwaterhouse	remove system.out	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	remove system.out	blob \| commitdiff \| diff to current
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	blob \| commitdiff \| diff to current
2007-04-27	amwaterhouse	Add param to Jmol path	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Applet remembers PDBEntries, can launch multiple struct...	blob \| commitdiff \| diff to current
2007-04-17	amwaterhouse	Add system.out for Mcview / Jmol detection	blob \| commitdiff \| diff to current
2007-03-27	amwaterhouse	Updated PDB loading params	blob \| commitdiff \| diff to current
2007-03-26	jprocter	grammar.	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	Launch applet jmol	blob \| commitdiff \| diff to current
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