JAL-1863 allow RNA secondary structure rows exported by Jalview to be imported again
[jalview.git] / src / jalview / bin / JalviewLite.java
2015-08-24 gmungocJAL-845 error message on syserr if supplied files don...
2015-07-10 tcofoegbuJAL-1759 code fix to enable testng ant task compile...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-22 Jim ProcterJAL-653 JAL-1780 reorder imports
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque...
2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-19 Charles OfoegbuJAL-1522 included installation details in log output
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-09-23 darolmarJAL-1355
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-28 Jim ProcterJAL-1507 bugfix
2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls...
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-08-29 darolmari18n
2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
2013-05-13 Jim ProcterJAL-1289 call oninit callback even if no alignment...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotatio...
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-27 jprocter(JAL-969) todo test re refactoring and possible change...
2011-10-21 jprocterMerge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
2011-10-21 jprocter(JAL-965) new api methods to allow features to be loade...
2011-10-21 jprocter(JAL-962) rejig parameter processing order so groups...
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-09-12 jprocterJAL-927 ensure api method calls that affect GUI state...
2011-08-15 jprocterJAL-904 added scrollToRow and scrollToColumn methods...
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour...
2011-08-03 jprocterrefactored resolvetocodebase code and reused for resour...
2011-07-28 jprocteradded 'since 2.x notes to parameters'. User configurabl...
2011-07-22 jprocterdefault parameter for colours in annotation shading...
2011-07-03 jprocterextracted jalviewlite API calls as separate interface...
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-05-05 jprocterimproved javascript callback execution thread and provi...
2011-02-14 jprocterJAL-621 - also renamed list of javascript handlers
2011-01-21 jprocterextended mouseover message with absolute sequence posit...
2011-01-18 jprocterremoved securityException caused by accessing class...
2011-01-18 jprocterrefactored VamsasListener to allow the source of the...
2011-01-17 jprocteradditional test - koders.com/java/fid4C9593FE80CE8AA811...
2011-01-17 jprocterwarn user that no JS callbacks will work by default...
2011-01-17 jprocterrevised default separator string expression to avoid...
2011-01-12 jprocterhandlers with no specified alignframe broadcast events...
2011-01-12 jprocter1.1 compat
2011-01-12 jprocterjavascript callback for selection, mousover, and functi...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-09-07 jprocterfix for JAL-631
2010-09-02 jprocter1.1 compatibility
2010-08-31 jprocternotes re JAL-623 and JAL-583, new api methods for addin...
2010-08-25 jprocterexcluded methods related to broken Jmol applet binding...
2010-08-20 jprocterrefactored external structure viewer binding API calls...
2010-06-29 jprocternew ajax api methods for linking existing jmol viewers...
2010-06-18 jprocternew jmol/pdb relates api calls
2010-04-30 jprocterjalview 2.5 release banner
2010-04-26 jprocterbuild date output in the About box, and build details...
2010-04-23 jprocterdefault value boolean parameter getter
2009-11-23 jprocterinitialise current and defaultAlignFrame and debug...
2009-11-13 jproctermake fileparse errors easier to debug by dumping file...
2009-06-08 jprocterapply gpl development license
2009-06-01 jprocterbetter decoupling of data loading routines for AJAX
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2009-04-04 jprocterrejigged jmol check thread to run prior to data loading...
2008-09-04 jproctermerge from 2_4_Release branch
2008-08-12 jprocteradded nojmol parameter to disable check for jmol
2008-08-05 jproctershowbutton default is true
2008-08-04 jprocteradded 'showbutton' applet parameter
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2007-10-27 jprocterwindowclose handler now calls EmbmenuFrame garbage...
2007-10-26 jprocterfixed applet API calls so they operate on the embedded...
2007-10-12 jprocteradded separator parameter with default of '|' to contro...
2007-10-11 jprocterremove conflict on javascript api
2007-10-11 jprocterstatic debug flag controlling output of excessive info...
2007-10-10 jprocterfeatureGroup show/hide and newView methods for applet...
2007-05-08 amwaterhouseremove system.out
2007-05-01 amwaterhouseremove system.out
2007-05-01 amwaterhouseCan specify PDB chain to map sequence to - only used...
2007-04-27 amwaterhouseAdd param to Jmol path
2007-04-17 amwaterhouseApplet remembers PDBEntries, can launch multiple struct...
2007-04-17 amwaterhouseAdd system.out for Mcview / Jmol detection
2007-03-27 amwaterhouseUpdated PDB loading params
2007-03-26 jproctergrammar.
2007-02-27 amwaterhouseLaunch applet jmol
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