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JAL-2473 revised default minimum dimension for Alignment Frame windows
[jalview.git]
/
src
/
jalview
/
bin
/
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-24
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-03-24
Jim Procter
JAL-2360 fix applet build by separating castor XML...
tree
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commitdiff
2017-02-27
gmungoc
JAL-1632 similarity options on TreeChooser panel affect...
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-08
Jim Procter
JAL-2366 updated default URL to jalview.org/services...
tree
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commitdiff
2017-01-26
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-26
kiramt
JAL-2316 Updated to use identifiers jalview service
tree
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
tree
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commitdiff
2017-01-09
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-01-05
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
tree
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commitdiff
2016-12-23
gmungoc
JAL-2360 removed UserDefinedColours.userColourSchemes
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
tree
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
tree
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commitdiff
2016-12-14
Jim Procter
Merge branch 'patch/JAL-2197_jpredforjnets' into develop
tree
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commitdiff
2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
tree
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commitdiff
2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
tree
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commitdiff
2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
tree
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
tree
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commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
tree
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commitdiff
2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-24
Jim Procter
JAL-2197 add jpredfile as alternative form of jnetfile...
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 apply license
tree
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 revert to using SequenceOntologyLite due to...
tree
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commitdiff
2016-10-05
gmungoc
JAL-1191 configure full SO for desktop, SOLite for...
tree
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commitdiff
2016-09-23
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
tree
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commitdiff
2016-09-19
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled PDB file parser configuratio...
tree
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commitdiff
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
tree
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commitdiff
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
tree
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commitdiff
2016-09-08
tcofoegbu
JAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...
tree
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
tree
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commitdiff
2016-08-22
gmungoc
JAL-1448 corrected for backwards compatibility for...
tree
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commitdiff
2016-08-18
gmungoc
JAL-2001 return copy of selection in getSelected()
tree
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commitdiff
2016-08-08
gmungoc
JAL-2168 document '-nonews' parameter
tree
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commitdiff
2016-08-05
gmungoc
JAL-2168 skip news feed if parameter "-nonews" is supplied
tree
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commitdiff
2016-08-05
gmungoc
JAL-1448 always use UK locale for formatted date properties
tree
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commitdiff
2016-07-21
tcofoegbu
Resolve merge conflict for StructureImportSettings
tree
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commitdiff
2016-07-21
tcofoegbu
JAL-2148 fix to heuristically determine chain terminati...
tree
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commitdiff
2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
tree
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commitdiff
2016-07-20
Jim Procter
JAL-1926 JAL-2106 don’t use PDB database constant as...
tree
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commitdiff
2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
tree
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
tree
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
tree
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commitdiff
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
tree
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commitdiff
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
tree
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commitdiff
2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
tree
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commitdiff
2016-05-26
tcofoegbu
JAL-1911 bugfix - do not save i18n text in preference...
tree
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commitdiff
2016-05-04
gmungoc
Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
tree
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
tree
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commitdiff
2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
tree
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commitdiff
2016-04-26
gmungoc
JAL-1981 catch any exception when setting QuaQua look...
tree
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commitdiff
2016-04-25
Jim Procter
JAL-2074 disable security manager at start up re: lopic...
tree
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commitdiff
2016-04-04
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2016-04-04
Jim Procter
JAL-2001 - note about possible side effect on JalviewLi...
tree
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commitdiff
2016-03-24
tcofoegbu
JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
tree
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commitdiff
2016-03-23
tcofoegbu
JAL-2009 added programmatic custom feature setting...
tree
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commitdiff
2016-03-22
tcofoegbu
JAL-1919 code improvement to make PDB sequence fetcher...
tree
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commitdiff
2016-02-01
gmungoc
Merge branch 'develop' into features/JAL-653_JAL-1766_h...
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2016-01-26
tcofoegbu
JAL-1999 JAL-1479 implemented configurable fail-safe...
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 applet build debug
tree
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commitdiff
2015-11-25
tcofoegbu
JAL-1479 bugfix after decoupling SIFTS preference settings
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-10-07
Jim Procter
JAL-1894 source formatting
tree
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commitdiff
2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headle...
tree
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-09-22
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
tree
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commitdiff
2015-09-18
gmungoc
JAL-1859 reinstated full path to file option (for local...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1882 variable renamed to avoid confusion with membe...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 refactor duplicated code to new HttpUtils...
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 code tidy, remove 'absolute URL' option
tree
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commitdiff
2015-09-16
gmungoc
JAL-1859 refactor addProtocol, setProtocolState as...
tree
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commitdiff
2015-09-15
gmungoc
JAL-1859 strip file name from applet documentbase
tree
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commitdiff
2015-09-15
gmungoc
JAL-1859 refactoring / debugging added
tree
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commitdiff
2015-09-14
gmungoc
JAL-1684 align added alignment to match original in...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 licencing for new files in src
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-09-09
gmungoc
JAL-857 added debug output to track down document base...
tree
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commitdiff
2015-09-08
Jim Procter
JAL-1695 make enableSplitFrame applet parameter true...
tree
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commitdiff
2015-09-07
Jim Procter
JAL-1522 make installation default 'applet' for the...
tree
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commitdiff
2015-08-24
gmungoc
JAL-845 error message on syserr if supplied files don...
tree
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commitdiff
2015-08-11
tcofoegbu
add ability to launch jalview from exported html +...
tree
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commitdiff
2015-07-23
Jim Procter
Merge branch 'features/JAL-1759jmolUpdate' into develop
tree
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commitdiff
2015-07-13
tcofoegbu
JAL-1788 added help documentation for biojson
tree
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commitdiff
2015-07-10
tcofoegbu
JAL-1759 code fix to enable testng ant task compile...
tree
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commitdiff
2015-07-09
tcofoegbu
JAL-1769 added test for commandline input operations
tree
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commitdiff
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