Merge branch 'features/JAL-2446NCList' into features/JAL-2574findFeaturesByColumn
[jalview.git] / src / jalview / bin /
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML...
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services...
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2017-01-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-05 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2016-12-23 gmungocJAL-2360 removed UserDefinedColours.userColourSchemes
2016-12-16 gmungocJAL-2360 added UserColourScheme.toAppletParameter+test...
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum,
2016-12-14 Jim ProcterMerge branch 'patch/JAL-2197_jpredforjnets' into develop
2016-12-13 kiramtMerge branch 'develop' into features/JAL-2316
2016-12-09 kiramtJAL-2316 Unit test updates and associated minor changes...
2016-12-07 kiramtJAL-2316 Restructure identifiers.org download
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterJAL-2197 add jpredfile as alternative form of jnetfile...
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 apply license
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocJAL-1191 revert to using SequenceOntologyLite due to...
2016-10-05 gmungocJAL-1191 configure full SO for desktop, SOLite for...
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled PDB file parser configuratio...
2016-09-13 tcofoegbuRevert "JAL-2164 JAL-1919 disabled and removed PDB...
2016-09-13 tcofoegbuJAL-2164 JAL-1919 disabled and removed PDB file parser...
2016-09-08 tcofoegbuJAL-2164 renamed 'DEFAULT_STRUCTURE_FORMAT' property...
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-22 gmungocJAL-1448 corrected for backwards compatibility for...
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected()
2016-08-08 gmungocJAL-2168 document '-nonews' parameter
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati...
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
2016-07-20 Jim ProcterJAL-1926 JAL-2106 don’t use PDB database constant as...
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-07-08 tcofoegbuJAL-1919 Fixed failing tests, enabled HETATM processing...
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser...
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference...
2016-05-04 gmungocMerge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
2016-05-02 gmungocJAL-1812 bind Groovy to Jalview rather than Desktop...
2016-04-28 gmungocJAL-2083 removed use of reflection for Groovy
2016-04-26 gmungocJAL-1981 catch any exception when setting QuaQua look...
2016-04-25 Jim ProcterJAL-2074 disable security manager at start up re: lopic...
2016-04-04 Jim ProcterJAL-1551 formatting
2016-04-04 Jim ProcterJAL-2001 - note about possible side effect on JalviewLi...
2016-03-24 tcofoegbuJAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-03-22 tcofoegbuJAL-1919 code improvement to make PDB sequence fetcher...
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe...
2015-11-25 tcofoegbuJAL-1479 applet build debug
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-08 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-07 Jim ProcterJAL-1894 source formatting
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-18 gmungocJAL-1859 reinstated full path to file option (for local...
2015-09-16 gmungocJAL-1882 variable renamed to avoid confusion with membe...
2015-09-16 gmungocJAL-1859 refactor duplicated code to new HttpUtils...
2015-09-16 gmungocJAL-1859 code tidy, remove 'absolute URL' option
2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as...
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase
2015-09-15 gmungocJAL-1859 refactoring / debugging added
2015-09-14 gmungocJAL-1684 align added alignment to match original in...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-09 gmungocJAL-857 added debug output to track down document base...
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true...
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the...
2015-08-24 gmungocJAL-845 error message on syserr if supplied files don...
2015-08-11 tcofoegbuadd ability to launch jalview from exported html +...
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop
2015-07-13 tcofoegbuJAL-1788 added help documentation for biojson
2015-07-10 tcofoegbuJAL-1759 code fix to enable testng ant task compile...
2015-07-09 tcofoegbuJAL-1769 added test for commandline input operations
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