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Merge branch 'develop' into bug/JAL-2314
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentAnnotation.java
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2346annotationChoice
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commitdiff
2016-12-02
gmungoc
JAL-2346 unit test for annotation drop-down list builder
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commitdiff
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diff to current
2016-12-01
Jim Procter
JAL-1933 update the bounds for the Gap annotation row...
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commitdiff
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
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diff to current
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
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diff to current
2016-08-16
gmungoc
JAL-2171 matching bracket default character for rna...
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commitdiff
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diff to current
2016-08-12
gmungoc
JAL-1841 bug fixes / code tidy for rna SS rendering...
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commitdiff
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diff to current
2015-11-16
tcofoegbu
JAL-1967 JAL-1479 refactored sequence<->structure mappi...
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commitdiff
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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commitdiff
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diff to current
2015-10-08
Jim Procter
Merge branch 'develop' into Release_2_9_0b1_Branch
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commitdiff
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diff to current
2015-10-07
Jim Procter
JAL-1912 formatting
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commitdiff
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diff to current
2015-10-07
Jim Procter
JAL-1912 javadoc for adjustForAlignment stating current...
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commitdiff
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diff to current
2015-10-07
Jim Procter
JAL-1912 efficiency: look up sequenceMapping once per...
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commitdiff
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diff to current
2015-10-05
tcofoegbu
JAL-1912 added null check for SequenceMapping variable...
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commitdiff
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diff to current
2015-10-01
tcofoegbu
JAL-1912 Double.NaN breaks JSON serialization - added...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-06-18
gmungoc
JAL-1781 annotation.sequenceRef now sequence id not...
features/JAL-1781annotationXmlIds
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 patch for regression from Anne Menard’s pseudo...
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
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commitdiff
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diff to current
2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
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commitdiff
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diff to current
2015-06-15
Jim Procter
JAL-1775 patch regression bug when displayChar is null...
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commitdiff
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diff to current
2015-06-15
Jim Procter
fix for JAL-1775 (and reorganise imports)
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commitdiff
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diff to current
2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flank...
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commitdiff
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diff to current
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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commitdiff
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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commitdiff
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diff to current
2014-11-24
Jim Procter
JAL-1595 annotation score is total number of rna helices
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commitdiff
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diff to current
2014-11-21
Jim Procter
JAL-1489 change initial value to distinguish non-rna...
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commitdiff
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diff to current
2014-11-20
Jim Procter
JAL-1569 rna pair code in secondary structure character...
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commitdiff
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diff to current
2014-11-20
Jim Procter
JAL-674 JAL-1569 mark RNA helix number in the value...
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commitdiff
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diff to current
2014-11-03
Jim Procter
JAL-1578 formatting and imports
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commitdiff
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diff to current
2014-11-03
Jim Procter
JAL-1551 formatting
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commitdiff
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diff to current
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
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commitdiff
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diff to current
2014-11-03
Jim Procter
javadoc
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commitdiff
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diff to current
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional informat...
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commitdiff
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diff to current
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
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commitdiff
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diff to current
2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation posit...
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commitdiff
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diff to current
2014-10-21
Jim Procter
JAL-1551 source formatting
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commitdiff
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diff to current
2014-10-15
Jim Procter
JAL-348 JAL-674 JAL-1564 TODO and implementation error...
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commitdiff
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diff to current
2014-10-15
Jim Procter
JAL-674 patch logic to test whether old and new sequenc...
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commitdiff
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diff to current
2014-10-15
Jim Procter
JAL-674 JAL-1305 JAL-348 new liftOver method and test...
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commitdiff
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diff to current
2014-07-18
j.procter@dundee...
JAL-1520 switch between Protein and non-canonical RNA...
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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commitdiff
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diff to current
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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commitdiff
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diff to current
2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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commitdiff
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diff to current
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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diff to current
2012-12-07
jprocter
revised renderer and annotation model to support differ...
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commitdiff
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diff to current
2012-12-07
jprocter
convenience function to get the RNA model for an annota...
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commitdiff
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diff to current
2012-12-07
jprocter
use new secstructure process algorithm
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commitdiff
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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commitdiff
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diff to current
2012-09-03
jprocter
JAL-1153 ensure _linecolour is copied in copy constructor
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commitdiff
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diff to current
2012-08-31
jprocter
Merge branch 'develop' into menard
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commitdiff
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diff to current
2012-08-29
jprocter
JAL-1153 new runtime property set to first non-null...
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commitdiff
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diff to current
2012-08-14
Anne Menard
last version stay many bugs ..
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commitdiff
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diff to current
2012-07-10
Anne Menard
v2
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commitdiff
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diff to current
2012-05-22
jprocter
update the copy constructor
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commitdiff
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diff to current
2011-11-03
jprocter
(JAL-811) new 'annotation type' field for marking annot...
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commitdiff
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diff to current
2011-10-28
jprocter
JAL-580 ensure WUSS annotation string is up to date...
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commitdiff
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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diff to current
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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commitdiff
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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commitdiff
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diff to current
2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
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commitdiff
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diff to current
2011-07-25
janengelhardt
Further structure accessing feature
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commitdiff
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diff to current
2011-07-25
janengelhardt
'Update to Covariaton color scheme' merge; JAL-580
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commitdiff
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diff to current
2011-07-25
janengelhardt
Start merging of Laurens Code
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commitdiff
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diff to current
2011-01-05
jprocter
graphThreshold not being copied by constructor
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commitdiff
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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commitdiff
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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commitdiff
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diff to current
2010-04-28
jprocter
group/annotation association housekeeping
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commitdiff
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diff to current
2010-04-23
jprocter
javadoc
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commitdiff
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diff to current
2010-04-16
jprocter
patch for bug #36198 - more to follow on Monday.
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commitdiff
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diff to current
2010-03-22
jprocter
todo and sensible default setting of min/max for histog...
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commitdiff
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diff to current
2010-03-11
jprocter
individual label format settings for each annotation...
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commitdiff
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diff to current
2009-08-21
jprocter
todo
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commitdiff
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diff to current
2009-07-24
jprocter
optional sequencegroup ref for annotation row
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commitdiff
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diff to current
2009-06-08
jprocter
apply gpl development license
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commitdiff
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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commitdiff
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diff to current
2008-08-20
jprocter
tooltip displays formatted annotation row description...
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commitdiff
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diff to current
2008-05-01
jprocter
fix for unicode char labels causing arrayOutOfBoundsExc...
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commitdiff
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diff to current
2008-02-22
jprocter
possible fix for stockhom ss-annotation re-creation...
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commitdiff
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diff to current
2007-11-30
jprocter
null pointer bugfix
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commitdiff
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diff to current
2007-10-02
jprocter
convenience constructor for duplicating an annotation...
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commitdiff
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diff to current
2007-05-28
jprocter
fix compact annotation array routine
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commitdiff
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diff to current
2007-05-02
jprocter
checks for negative start column in restrict
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commitdiff
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diff to current
2007-05-02
amwaterhouse
Padgaps is false by default
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commitdiff
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diff to current
2007-05-01
amwaterhouse
Pad gaps method
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commitdiff
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diff to current
2007-04-30
jprocter
pad should leave null annotations array null
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commitdiff
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diff to current
2007-04-30
jprocter
convenient creation of 'score only' annotation.
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commitdiff
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diff to current
2007-04-27
amwaterhouse
padGaps moved
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diff to current
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