2019-08-23 |
Jim Procter | JAL-3417 access to consensus,conservation,cdsprofile... |
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2019-03-04 |
gmungoc | Merge branch 'bug/JAL-3099alignmentVisibleWidth' into... |
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2018-11-28 |
gmungoc | JAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview |
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2018-09-10 |
gmungoc | JAL-3099 new method AlignmentI.getVisibleWidth() |
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2018-02-21 |
kiramt | JAL-2778 Revert back to old synchronisation |
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2018-01-26 |
kiramt | JAL-2778 try another way to draw sequences with reduced... |
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2018-01-19 |
kiramt | JAL-2759 Moved propagateInsertions out of HiddenColumns |
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2018-01-15 |
kiramt | JAL-2759 Refactor of hideInsertionsFor after review |
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2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo |
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2017-09-04 |
Jim Procter | JAL-2675 source license |
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2017-07-24 |
gmungoc | spike branch updated from latest features/JAL-2446 |
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2017-06-09 |
gmungoc | JAL-2446 merged to spike branch |
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2017-06-07 |
kiramt | JAL-2591 More refactoring (incomplete) |
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2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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2017-03-10 |
kiramt | JAL-2437 Fixed reordering of sequences when hiding... |
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2017-03-03 |
kiramt | JAL-2388 Initial removal of hidden cols/seqs out of... |
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2017-02-15 |
Jim Procter | JAL-2374 javadoc - qualify that sequence argument to... |
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2017-01-09 |
gmungoc | JAL-2371 pull up isNucleotide to SequenceCollectionI |
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2017-01-06 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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2017-01-05 |
gmungoc | JAL-2374 fix popup out by one and multiple groups bugs |
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2016-12-12 |
gmungoc | JAL-2360 simplify nucleotide flag, remove setter |
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2016-10-28 |
Jim Procter | JAL-966 JAL-1738 JAL-345 interfaces for SearchResults... |
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2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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2016-08-19 |
Jim Procter | JAL-2154 refactor setSequenceAt to replaceSequenceAt... |
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2016-07-18 |
Jim Procter | JAL-2145 documentation of getWidth() |
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2016-07-04 |
gmungoc | JAL-2110 unused method removed |
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2016-06-19 |
Jim Procter | JAL-2110 JAL-2131 JAL-1765 remove reference to jalview... |
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2016-05-31 |
gmungoc | JAL-2023 adjustments to mappings added for split frame... |
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2016-04-11 |
tcofoegbu | JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl... |
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2015-12-22 |
gmungoc | JAL-653 realise virtual mappings and align when adding... |
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2015-10-16 |
Jim Procter | JAL-1925 update source version in license Release_2_9_0b2 |
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2015-10-08 |
Jim Procter | JAL-1894 update year/version in copyright |
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2015-09-10 |
Jim Procter | JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... |
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2015-09-10 |
Jim Procter | JAL-1645 source formatting and organise imports |
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2015-07-21 |
tcofoegbu | JAL-1443 bugfix to prevent loading of unidentifiable... |
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2015-03-26 |
gmungoc | Merge develop to Release_2_8_3_Branch |
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2015-03-06 |
Jim Procter | JAL-1683 replace year/version strings with tokens in... |
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2014-12-15 |
Jim Procter | JAL-1620 version bump and release notes |
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2014-10-07 |
gmungoc | JAL-1264 wip |
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2014-06-06 |
Jim Procter | JAL-1517 source formatting |
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2014-06-06 |
Jim Procter | JAL-1517 fix copyright for 2.8.2 |
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2014-06-05 |
Jim Procter | JAL-1517 update copyright to version 2.8.2 |
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2014-05-22 |
Jim Procter | JAL-1503 update version in GPL header |
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2014-01-29 |
Jim Procter | JAL-1432 updated copyright notices |
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2013-06-23 |
Jim Procter | JAL-1230 proxy method for synchronising internal Alignm... |
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2012-10-22 |
jprocter | Jalview 2.8 Source Header |
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2012-10-03 |
jprocter | formatting |
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2012-07-03 |
jprocter | JAL-961 allow calcId to be specified independently... |
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2012-06-13 |
jprocter | javatidy |
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2012-06-12 |
jprocter | JAL-1115 refactor reordering code operating directly... |
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2012-06-12 |
jprocter | JAL-1115 refactor base collection for Alignment from... |
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2012-05-30 |
jprocter | JAL-1114 - refactor methods handling Vectors and Hashta... |
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2012-05-23 |
jprocter | JAL-961 - annotatable datamodel objects can be queried... |
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2012-05-22 |
jprocter | Merge remote-tracking branch 'origin/Tcoffee_JAL-1065... |
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2011-10-10 |
jprocter | update author list in license for (JAL-826) |
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2011-10-04 |
jprocter | Merge remote-tracking branch 'remotes/origin/2_5_1_rna_... |
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2011-09-27 |
jprocter | apply version 2.7 copyright |
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2011-08-11 |
janengelhardt | JAL-885; hasRNAStructure method was introduced to Align... |
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2011-04-21 |
jprocter | allow an alignment annotation row to be removed and... |
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2010-09-23 |
jprocter | apply jalview code style |
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2010-09-23 |
jprocter | Jalview 2.6 source licence |
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2010-06-03 |
jprocter | javadoc re JAL-554 |
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2010-04-30 |
jprocter | jalview 2.5 release banner |
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2010-04-29 |
jprocter | isAligned assertion (bug 0008144) |
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2009-07-24 |
jprocter | insert annotation at specific position |
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2009-06-08 |
jprocter | apply gpl development license |
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2008-12-19 |
jprocter | left and right justify method |
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2008-12-05 |
jprocter | support for multiple accession retrieval from a databas... |
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2008-11-12 |
jprocter | javadoc and new method to get alignment sequence index... |
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2008-09-04 |
jprocter | merge from 2_4_Release branch |
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2008-07-18 |
jprocter | allow findSeq to begin *after* a given sequence in... |
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2007-11-30 |
jprocter | case invariant matching of seqeunce feature to sequence... |
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2007-06-17 |
jprocter | AlignedCodonFrame holds mapping information between... |
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2007-05-02 |
jprocter | return flag indicating if annotations were actually... |
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2007-05-01 |
jprocter | javadoc |
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2007-05-01 |
jprocter | removeAlignmentAnnotation only removes annotation objec... |
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2007-04-27 |
jprocter | getProperties returns nullk for no properties |
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2007-04-27 |
jprocter | documentation and getProperties method |
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2007-04-25 |
amwaterhouse | alignmentProperties added |
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2007-04-19 |
jprocter | javadoc note on padding AlignmentAnnotation to alignmen... |
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2007-04-17 |
jprocter | copy constructors and AlignmentAnnotation sequenceRef... |
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2007-04-02 |
amwaterhouse | Destroy alignment moved to finalize |
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2007-04-02 |
amwaterhouse | Destroy aligment method added |
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2007-02-07 |
amwaterhouse | Formatting |
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2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand |
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2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert |
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2006-12-21 |
amwaterhouse | remove unnecessary import |
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2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
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2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
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2006-10-06 |
amwaterhouse | AAFrequency optimized |
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2006-08-21 |
amwaterhouse | header updated |
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2006-08-21 |
jprocter | removeGaps method can record changes in alignment colum... |
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2006-08-14 |
amwaterhouse | findSequenceMatch returns multiple sequences |
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2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
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2006-07-26 |
amwaterhouse | Remove left, right, empty cols work on hidden reps |
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2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed |
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2006-06-09 |
amwaterhouse | getSequencesArray |
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2006-05-10 |
amwaterhouse | addAnnotation with seqRef |
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