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JAL-1233 tidy up and use same RNA helix colours in colour by annotation and RNA helix...
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentI.java
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-10-07
gmungoc
JAL-1264 wip
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-06-23
Jim Procter
JAL-1230 proxy method for synchronising internal Alignm...
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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diff to current
2012-07-03
jprocter
JAL-961 allow calcId to be specified independently...
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2012-06-13
jprocter
javatidy
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2012-06-12
jprocter
JAL-1115 refactor reordering code operating directly...
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diff to current
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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2012-05-23
jprocter
JAL-961 - annotatable datamodel objects can be queried...
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2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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diff to current
2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
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2011-04-21
jprocter
allow an alignment annotation row to be removed and...
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diff to current
2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-06-03
jprocter
javadoc re JAL-554
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-04-29
jprocter
isAligned assertion (bug 0008144)
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2009-07-24
jprocter
insert annotation at specific position
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2009-06-08
jprocter
apply gpl development license
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2008-12-19
jprocter
left and right justify method
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2008-12-05
jprocter
support for multiple accession retrieval from a databas...
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2008-11-12
jprocter
javadoc and new method to get alignment sequence index...
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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diff to current
2008-07-18
jprocter
allow findSeq to begin *after* a given sequence in...
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diff to current
2007-11-30
jprocter
case invariant matching of seqeunce feature to sequence...
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2007-06-17
jprocter
AlignedCodonFrame holds mapping information between...
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2007-05-02
jprocter
return flag indicating if annotations were actually...
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2007-05-01
jprocter
javadoc
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2007-05-01
jprocter
removeAlignmentAnnotation only removes annotation objec...
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2007-04-27
jprocter
getProperties returns nullk for no properties
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2007-04-27
jprocter
documentation and getProperties method
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2007-04-25
amwaterhouse
alignmentProperties added
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2007-04-19
jprocter
javadoc note on padding AlignmentAnnotation to alignmen...
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2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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2007-04-02
amwaterhouse
Destroy alignment moved to finalize
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diff to current
2007-04-02
amwaterhouse
Destroy aligment method added
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2007-02-07
amwaterhouse
Formatting
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2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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2007-01-24
amwaterhouse
AdjustAnnotations needs position, number and insert
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2006-12-21
amwaterhouse
remove unnecessary import
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2006-10-24
amwaterhouse
maxIdLength redundant, deleteCols, trimLeft, removeGaps...
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2006-10-12
amwaterhouse
HiddenSequences now array, not hashtable
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2006-10-06
amwaterhouse
AAFrequency optimized
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2006-08-21
amwaterhouse
header updated
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2006-08-21
jprocter
removeGaps method can record changes in alignment colum...
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2006-08-14
amwaterhouse
findSequenceMatch returns multiple sequences
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2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
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diff to current
2006-07-26
amwaterhouse
Remove left, right, empty cols work on hidden reps
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2006-07-12
amwaterhouse
sequences are private in SequenceGroup
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2006-07-07
amwaterhouse
Redundant Remove Redundancy Removed
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2006-06-09
amwaterhouse
getSequencesArray
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2006-05-10
amwaterhouse
addAnnotation with seqRef
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2006-03-16
amwaterhouse
getHiddenSequences
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2006-02-15
amwaterhouse
Removed SuperGroup
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2006-02-03
amwaterhouse
Add annotation with sequence ref updated
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2006-01-30
amwaterhouse
AddAnnotation with start index
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2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
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2005-12-06
amwaterhouse
after merge
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2005-09-22
amwaterhouse
isNucleotide
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diff to current
2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-04-01
amwaterhouse
Alignment Annotation added
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2005-02-10
amwaterhouse
isAligned method added
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diff to current
2005-01-21
amwaterhouse
SuperGroups added
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2005-01-13
amwaterhouse
FindAllGroups added
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diff to current
2004-12-01
amwaterhouse
Gapchar is a char, not string
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2004-11-16
amwaterhouse
SequenceGroup may have name
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diff to current
2004-11-02
amwaterhouse
Jalview Imported Sources
start
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git://source.jalview.org / jalview.git / history