JAL-2094 first pass with jalview.api.ColorI interface
[jalview.git] / src / jalview / datamodel / SequenceGroup.java
2016-05-05 gmungocJAL-2094 first pass with jalview.api.ColorI interface
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-28 gmungocJAL-1610 check reference annotations against alignment...
2014-10-10 gmungocJAL-1264 reverted (removed added method)
2014-10-07 gmungocJAL-1264 wip
2014-09-23 gmungocJAL-1264 first cut of panel for annotation show/hide...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Relea...
2013-10-11 Jim ProcterJAL-1114 javadoc
2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus renderi...
2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-08-17 jprocterJAL-813 fix - check whether conservation is applied...
2011-04-21 jprocterallow an existing alignment annotation row to be bound...
2010-12-17 jprocterjavadoc
2010-12-09 jprocterjavadoc and additional convenience method for JAL-716
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-06 jprocterpatch for JAL-542
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jproctermake sure references are intact when group annotation...
2010-04-14 jprocterprofile visualizations are now logos
2010-03-30 jproctername update for group autoannotation and consensus...
2010-03-26 jproctercomments
2009-08-21 jprocterbasic implementation of profile display and todos
2009-07-24 jproctersequence groups carry their own conservation and consen...
2009-06-19 jprocterintersect did not intersect (used in selection listener)
2009-06-08 jprocterapply gpl development license
2009-02-24 jprocterbugfix for occasional nullpointer exceptions when selec...
2009-02-06 jproctershowUnconserved group attribute
2008-12-19 jprocteravoid null pointer exception when groupName is not set
2008-11-12 jprocterjdk1.2 compatibility
2008-11-12 jprocternew copy constructor and intersect method
2008-11-04 jprocterbeginning of implementation of new properties for hide...
2008-09-04 jproctermerge from 2_4_Release branch
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-02-22 jprocterjavadoc
2007-11-16 jprocterjavadoc
2007-05-10 jprocterensure that only annotation referenced in given alignme...
2007-05-02 jprocteronly return non-empty subsequences when getting selecti...
2007-04-26 amwaterhousecolourText = false
2007-04-19 jproctersequence associated alignment annotation copy for colum...
2007-04-17 jproctercopy constructors and AlignmentAnnotation sequenceRef...
2007-02-07 amwaterhouseFormatting
2007-01-31 amwaterhouseUnique name for new group and treegroup
2007-01-29 amwaterhouseDescription added
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-11-13 amwaterhouseText colour for group
2006-11-06 amwaterhouseOnly calculate consenus from start to end
2006-10-27 amwaterhouseIf sequence is null, dont add it
2006-10-24 amwaterhousechangeCase, removeGaps moved to commands package
2006-10-12 amwaterhouseConvenient function findEndRes
2006-10-10 amwaterhouseRemove growing hashtable
2006-08-21 amwaterhouseheader updated
2006-08-07 amwaterhousecatch out of memory error for consensus when loading...
2006-07-19 amwaterhousedatasetSeq bug
2006-07-18 amwaterhousegetSelectionAsNewSequence added
2006-07-12 amwaterhousesequences are private in SequenceGroup
2005-08-22 amwaterhouseConservation colour scheme is no more
2005-06-30 amwaterhouseFormatting changes
2005-06-16 amwaterhouseSort Groups modified
2005-06-14 amwaterhouseremove system.out
2005-06-14 amwaterhousereset if clustalX colouring
2005-06-10 amwaterhouseset conservation/consensus in constructor
2005-06-08 amwaterhouseRecalc accelerated
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-24 amwaterhousereplace get with elementAt
2005-05-23 jprocteradded getSequencesInOrder (part of refactor from AlignP...
2005-04-15 amwaterhouseconservation & consensus recalc if group changed
2005-03-23 amwaterhouseadjustForRemoveLeft / Right added
2005-03-21 amwaterhousegroup has outline colour
2005-01-21 amwaterhouseSuperGroups added
2004-12-14 amwaterhouseAddOrRemove function added, start and end res fixed
2004-12-10 amwaterhouseCheck if sequence is in group before adding
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