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Merge branch 'develop' into bug/JAL-2314
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceGroup.java
2017-03-31
gmungoc
JAL-2405 additional checks for circular reference in...
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commitdiff
2017-02-15
Jim Procter
JAL-2374 new contains methods for seq and seq,apos
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diff to current
2017-02-09
gmungoc
JAL-2405 check for circular reference in SequenceGroup...
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2017-01-27
gmungoc
JAL-2371 CollectionColourScheme renamed ResidueShader...
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2017-01-27
gmungoc
JAL-2360 JAL-2371 updates from review CR-JAL-1
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diff to current
2017-01-09
gmungoc
JAL-2371 pull up isNucleotide to SequenceCollectionI
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diff to current
2017-01-05
gmungoc
JAL-2371 tests added
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2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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diff to current
2016-12-21
gmungoc
JAL-2360 Javadoc and test cases for findAnnotation
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diff to current
2016-11-17
gmungoc
JAL-98 ProfilesI container for profiles for columns
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diff to current
2016-11-02
gmungoc
JAL-98 JAL-1854 encapsulate 'magic number' threshold...
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2016-11-02
gmungoc
JAL-98 ProfileI interface for Profile
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diff to current
2016-11-02
gmungoc
JAL-98 Profile and ResidueCount moved from analysis...
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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diff to current
2016-10-03
gmungoc
JAL-98 use Profile to store consensus, ResidueCount...
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2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
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2016-08-31
Jim Procter
JAL-2034 fix logic so recalcConservation(true) returns...
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diff to current
2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-06-20
Jim Procter
JAL-1551 tidy
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diff to current
2016-06-20
Jim Procter
JAL-2068 avoid ArrayIndexOutOfBounds when consensus...
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2016-03-25
Jim Procter
JAL-2034 make colour scheme update optional when group...
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diff to current
2016-03-25
Jim Procter
JAL-1551
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2015-11-05
tcofoegbu
JAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-02-12
Jim Procter
JAL-1115 List rather than vector for sequence groups...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
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diff to current
2014-10-10
gmungoc
JAL-1264 reverted (removed added method)
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2014-10-07
gmungoc
JAL-1264 wip
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2014-09-23
gmungoc
JAL-1264 first cut of panel for annotation show/hide...
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2014-06-06
Jim Procter
JAL-1517 source formatting
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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diff to current
2014-05-01
Jim Procter
JAL-1492 formatting and squash NPEs
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2014-05-01
Jim Procter
JAL-1492 JAL-1397 make AnnotatedCollectionI context...
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2014-05-01
Jim Procter
JAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
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2014-02-03
Jim Procter
Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-10-11
Jim Procter
Merge branch 'JAL-1164_disorderforselection' into Relea...
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2013-10-11
Jim Procter
JAL-1114 javadoc
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2013-09-02
Jim Procter
JAL-1373 pass size of sequence set to consensus renderi...
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2013-07-11
Jim Procter
JAL-1347 make it efficient to call getConsensus to...
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diff to current
2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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2012-05-23
jprocter
JAL-961 - annotatable datamodel objects can be queried...
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2012-05-22
jprocter
Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...
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diff to current
2011-10-11
jprocter
normalised logo rendering (JAL-958)
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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diff to current
2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
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2011-04-21
jprocter
allow an existing alignment annotation row to be bound...
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2010-12-17
jprocter
javadoc
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2010-12-09
jprocter
javadoc and additional convenience method for JAL-716
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diff to current
2010-09-23
jprocter
apply jalview code style
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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diff to current
2010-06-11
jprocter
patched for JAL-531 - only display full symbol distribu...
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diff to current
2010-06-06
jprocter
patch for JAL-542
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diff to current
2010-04-30
jprocter
jalview 2.5 release banner
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diff to current
2010-04-29
jprocter
make sure references are intact when group annotation...
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diff to current
2010-04-14
jprocter
profile visualizations are now logos
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diff to current
2010-03-30
jprocter
name update for group autoannotation and consensus...
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diff to current
2010-03-26
jprocter
comments
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2009-08-21
jprocter
basic implementation of profile display and todos
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2009-07-24
jprocter
sequence groups carry their own conservation and consen...
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diff to current
2009-06-19
jprocter
intersect did not intersect (used in selection listener)
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2009-06-08
jprocter
apply gpl development license
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2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
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diff to current
2009-02-06
jprocter
showUnconserved group attribute
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2008-12-19
jprocter
avoid null pointer exception when groupName is not set
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diff to current
2008-11-12
jprocter
jdk1.2 compatibility
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diff to current
2008-11-12
jprocter
new copy constructor and intersect method
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2008-11-04
jprocter
beginning of implementation of new properties for hide...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-07-18
jprocter
Sequence label colour stored for each sequence group
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2008-02-22
jprocter
javadoc
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diff to current
2007-11-16
jprocter
javadoc
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diff to current
2007-05-10
jprocter
ensure that only annotation referenced in given alignme...
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diff to current
2007-05-02
jprocter
only return non-empty subsequences when getting selecti...
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2007-04-26
amwaterhouse
colourText = false
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2007-04-19
jprocter
sequence associated alignment annotation copy for colum...
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diff to current
2007-04-17
jprocter
copy constructors and AlignmentAnnotation sequenceRef...
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diff to current
2007-02-07
amwaterhouse
Formatting
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2007-01-31
amwaterhouse
Unique name for new group and treegroup
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2007-01-29
amwaterhouse
Description added
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diff to current
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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commitdiff
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diff to current
2006-11-13
amwaterhouse
Text colour for group
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commitdiff
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diff to current
2006-11-06
amwaterhouse
Only calculate consenus from start to end
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2006-10-27
amwaterhouse
If sequence is null, dont add it
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