git://source.jalview.org / jalview.git / history
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-1705 merge contiguous ranges when constructing a MapList (e.g. for
[jalview.git] / src / jalview / datamodel /
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... tree | commitdiff
2016-01-23 gmungocJAL-1705 todo comment re writing DBRefEntry/SequenceFea... tree | commitdiff
2016-01-21 gmungocJAL-1705 ENSEMBL added, unused constants removed tree | commitdiff
2016-01-21 gmungocJAL-1705 suppress jvsuffix (for sequence id matching... tree | commitdiff
2016-01-21 gmungocJAL-1705 toString() added (for debugging) tree | commitdiff
2016-01-21 gmungocJAL-1705 isEmpty() and (debug) toString() methods added tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2015-12-22 gmungocJAL-653 encapsulate Strand, Attributes, Status of Seque... tree | commitdiff
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... tree | commitdiff
2015-12-22 gmungocJAL-653 GFF new/refactored helper classes tree | commitdiff
2015-12-22 gmungocJAL-653 AlignedCodonFrame internal refactor, merge... tree | commitdiff
2015-12-03 gmungocJAL-653 handle reverse strand mapping in SearchResults... tree | commitdiff
2015-12-03 gmungocJAL-653 mappings always reside on the dataset alignment... tree | commitdiff
2015-11-30 gmungocJAL-653 (experimental) methods to resolve dummy to... tree | commitdiff
2015-11-30 gmungocJAL-653 getStrand javadoc/refactor/test tree | commitdiff
2015-11-30 gmungocJAL-1421 use generics JAL-1551 @Override annotations... tree | commitdiff
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... tree | commitdiff
2015-10-08 tcofoegbumerge tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... tree | commitdiff
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... tree | commitdiff
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient... tree | commitdiff
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings tree | commitdiff
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst... tree | commitdiff
2015-08-17 gmungocJAL-1800 separated SearchResults.getCharacters() from... tree | commitdiff
2015-08-17 gmungocJAL-1800 SearchResults.equals() to allow smarter mouseo... tree | commitdiff
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... tree | commitdiff
2015-08-04 tcofoegbuJAL-1821 updated the reference sequence column of struc... tree | commitdiff
2015-07-30 tcofoegbuJAL-1443 modified exception notifications tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'bug/JAL-1819_isNaN' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1551 JAL-1819 formatting/imports tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable... tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-06 gmungocJAL-1421 generics used for leaner safer code tree | commitdiff
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject tree | commitdiff
2015-07-01 gmungocJAL-1802 handle slide sequences edits in split frame... tree | commitdiff
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-26 tcofoegbuJAL-1641 fixed broken functionalities after refactor tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject tree | commitdiff
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate tree | commitdiff
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... tree | commitdiff
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from... tree | commitdiff
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds tree | commitdiff
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo... tree | commitdiff
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null... tree | commitdiff
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports) tree | commitdiff
2015-06-12 tcofoegbuJAL-1641 refactor tree | commitdiff
2015-06-10 gmungocMerge remote-tracking branch tree | commitdiff
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... tree | commitdiff
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes... tree | commitdiff
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret... tree | commitdiff
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local... tree | commitdiff
2015-06-05 Jim ProcterJAL-1551 formatting tree | commitdiff
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen... tree | commitdiff
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute... tree | commitdiff
2015-05-22 tcofoegbuJAL-1745, JAL-1717 improvement to ensure cached PDB... tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted to JUnit test 'as seen' tree | commitdiff
2015-05-15 gmungocJAL-1270 main method converted 'as seen' to JUnit tree | commitdiff
2015-05-13 gmungocJAL-1712 fixes/tests for Castor binding of EMBL XML... tree | commitdiff
2015-05-13 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2015-05-13 tcofoegbuFixed some broken tests tree | commitdiff
2015-05-12 gmungocJAL-1712 fixes/tests for Castor binding and 'show flank... tree | commitdiff
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... tree | commitdiff
2015-04-14 gmungocJAL-1693 generate multiple exon sequences for 1-many... tree | commitdiff
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... tree | commitdiff
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop) tree | commitdiff
2015-04-07 gmungocJAL-1691 defensive check for null tree | commitdiff
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 typecast tree | commitdiff
2015-02-12 Jim Procterjavadoc tree | commitdiff
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... tree | commitdiff
2015-01-27 gmungocJAL-1588 new class renamed tree | commitdiff
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... tree | commitdiff
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) tree | commitdiff
2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referen... tree | commitdiff
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples... tree | commitdiff
2015-01-22 Charles OfoegbuJAL-1553 added applet support for the select-column... tree | commitdiff
2015-01-20 Charles Ofoegbubasic house keeping tree | commitdiff
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions... tree | commitdiff
2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in... tree | commitdiff
2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence tree | commitdiff
2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
next