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Merge branch 'features/mchmmer' into features/mchmmer_merge_JAL-1950
[jalview.git] / src / jalview / ext / ensembl / EnsemblSeqProxy.java
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... blob | commitdiff
2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF blob | commitdiff
2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retri... blob | commitdiff | diff to current
2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Paren... blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu... blob | commitdiff | diff to current
2017-08-25 gmungocJAL-2480 suppress debug timing output that got left in blob | commitdiff | diff to current
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-25 gmungocJAL-2050 make SequenceFeature.score final, adjust const... blob | commitdiff | diff to current
2017-05-24 gmungocJAL-2529 add object_type=cdna to EnsemblCdna parameters blob | commitdiff | diff to current
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... blob | commitdiff | diff to current
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... blob | commitdiff | diff to current
2016-12-08 gmungocMerge branch 'develop' into features/JAL-2295setChimera... blob | commitdiff | diff to current
2016-12-07 gmungocJAL-2354 handle error response when fetching features blob | commitdiff | diff to current
2016-11-08 gmungocJAL-2295 make RangeComparator a top level class for... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 apply license blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-10-03 gmungocJAL-2110 JAL-1705 handle not found (400) better blob | commitdiff | diff to current
2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP... blob | commitdiff | diff to current
2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions blob | commitdiff | diff to current
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p... blob | commitdiff | diff to current
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ... blob | commitdiff | diff to current
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify... blob | commitdiff | diff to current
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... blob | commitdiff | diff to current
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds blob | commitdiff | diff to current
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... blob | commitdiff | diff to current
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... blob | commitdiff | diff to current
2016-04-11 gmungocJAL-1705 code/comment tidy only blob | commitdiff | diff to current
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) blob | commitdiff | diff to current
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... blob | commitdiff | diff to current
2016-03-16 gmungocJAL-1705 xref ENST to correct (ENSP) accession id blob | commitdiff | diff to current
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on... blob | commitdiff | diff to current
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot blob | commitdiff | diff to current
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr... blob | commitdiff | diff to current
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... blob | commitdiff | diff to current
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts blob | commitdiff | diff to current
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac... blob | commitdiff | diff to current
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... blob | commitdiff | diff to current
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks... blob | commitdiff | diff to current
2016-02-01 gmungocJAL-1705 further unit tests blob | commitdiff | diff to current
2016-02-01 gmungocJAL-1705 set Uniprot xref as 'source dbref' (for SIFTS... blob | commitdiff | diff to current
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... blob | commitdiff | diff to current
2016-01-30 gmungocJAL-1705 refactored cross-reference fetching (CCDS... blob | commitdiff | diff to current
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... blob | commitdiff | diff to current
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... blob | commitdiff | diff to current
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring blob | commitdiff | diff to current
2016-01-27 gmungocJAL-1705 add exon name to features and render on peptid... blob | commitdiff | diff to current
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name... blob | commitdiff | diff to current
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... blob | commitdiff | diff to current
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring blob | commitdiff | diff to current
2016-01-23 gmungocJAL-1705 compute peptide variants from dna; add "conseq... blob | commitdiff | diff to current
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and... blob | commitdiff | diff to current
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... blob | commitdiff | diff to current
2015-06-28 Jim ProcterJAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest blob | commitdiff | diff to current