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Merge branch 'features/JAL-2360colourSchemeApplicability' into
[jalview.git] / src / jalview / ext / ensembl /
2016-12-09 gmungocJAL-2105 updated for reviewed REST version 4.8 tree | commitdiff
2016-12-07 gmungocJAL-2354 handle error response when fetching features tree | commitdiff
2016-11-25 gmungocMerge branch 'develop' into trialMerge tree | commitdiff
2016-10-13 gmungocJAL-2253 2 second timeout on ping URL, default 5 minute... feature/JAL-2553ensemblGenomes tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 apply license tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-05 gmungocJAL-2105 update Ensembl REST version to 4.7 tree | commitdiff
2016-10-03 gmungocJAL-2110 JAL-1705 handle not found (400) better tree | commitdiff
2016-09-30 Jim ProcterJAL-2210 add uniprot+mapping between ENST and ENSP... tree | commitdiff
2016-09-28 Jim ProcterJAL-2210 JAL-2232 check response code before attempting... tree | commitdiff
2016-09-27 Jim ProcterJAL-2210 report stack trace for unexpected exceptions tree | commitdiff
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned... tree | commitdiff
2016-08-30 Jim ProcterMerge branch 'develop' into merge/develop_bug/JAL-2154p... tree | commitdiff
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum tree | commitdiff
2016-08-26 gmungocJAL-2049 set Ensembl variant source to ENSEMBL if ... tree | commitdiff
2016-08-25 Jim ProcterJAL-2106 JAL-2154 cross-refs from Ensembl should verify... tree | commitdiff
2016-08-25 Jim ProcterMerge branch 'develop' into refactor/JAL-2106_sourceDbR... tree | commitdiff
2016-08-24 Jim ProcterJAL-2106 removed setSourceDBRef, refactor getSourceDBRe... tree | commitdiff
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link... tree | commitdiff
2016-07-18 gmungocJAL-2105 check content of Ensembl REST ping response tree | commitdiff
2016-07-06 gmungocJAL-2110 ensuring mapped dbrefs between protein and cds tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-04-29 gmungocJAL-2051 better checking of retrieved / duplicated... tree | commitdiff
2016-04-14 gmungocJAL-1705 refactored/utility methods to detect e.g.... tree | commitdiff
2016-04-11 gmungocJAL-1705 code/comment tidy only tree | commitdiff
2016-04-11 gmungocJAL-2051 fetch Ensembl Gene accessions one at a time tree | commitdiff
2016-04-01 gmungocJAL-1705 fetch all Ensembl xrefs (except GO terms) tree | commitdiff
2016-03-23 gmungocJAL-1705 add DBRefEntry for 'self' to retrieved transcr... tree | commitdiff
2016-03-16 gmungocJAL-1705 xref ENST to correct (ENSP) accession id tree | commitdiff
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI tree | commitdiff
2016-03-15 gmungocJAL-1705 code tidy/comment only tree | commitdiff
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on... tree | commitdiff
2016-03-11 gmungocJAL-1705 check Retry-After response header tree | commitdiff
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot tree | commitdiff
2016-03-04 gmungocJAL-1705 EnsemblGenomes a top level db source tree | commitdiff
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr... tree | commitdiff
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support... tree | commitdiff
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts tree | commitdiff
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... tree | commitdiff
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac... tree | commitdiff
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for... tree | commitdiff
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl... tree | commitdiff
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks... tree | commitdiff
2016-02-04 gmungocJAL-2003 export features on alignment, not alignment... tree | commitdiff
2016-02-01 gmungocJAL-1705 further unit tests tree | commitdiff
2016-02-01 gmungocJAL-1705 set Uniprot xref as 'source dbref' (for SIFTS... tree | commitdiff
2016-02-01 gmungocJAL-1705 JAL-1191 SequenceOntologyLite added as hard... tree | commitdiff
2016-01-30 gmungocJAL-1705 refactored cross-reference fetching (CCDS... tree | commitdiff
2016-01-29 gmungocJAL-1705 fetch Uniprot and PDB xrefs for Ensembl protei... tree | commitdiff
2016-01-28 gmungocJAL-1705 refine feature copying to including 5' and... tree | commitdiff
2016-01-28 gmungocJAL-1705 tests added, minor bugfix and refactoring tree | commitdiff
2016-01-27 gmungocJAL-1705 add exon name to features and render on peptid... tree | commitdiff
2016-01-27 gmungocJAL-1705 use GET for single queries; set gene name... tree | commitdiff
2016-01-26 gmungocJAL-1705 derive transcript sequences from gene sequence... tree | commitdiff
2016-01-25 gmungocJAL-1705 EnsemblGene added, and related refactoring tree | commitdiff
2016-01-23 gmungocJAL-1705 compute peptide variants from dna; add "conseq... tree | commitdiff
2016-01-21 gmungocJAL-1705 reworked Ensembl clients now fetching and... tree | commitdiff
2016-01-08 gmungocJAL-1705 DbSourceProxy properties converted to methods... tree | commitdiff
2015-11-09 gmungocJAL-1705 type enum can encapsulate the corresponding... tree | commitdiff
2015-06-28 Jim ProcterJAl-1705 ENSEMBL cDNA type cannot be queried with pepti... tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 javadoc tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 concrete classes for different ENSEMBL sequenc... tree | commitdiff
2015-06-28 Jim ProcterJAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest tree | commitdiff
2015-06-26 Jim ProcterJAL-1705 basic client & tests for rest.ensembl.org... tree | commitdiff