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[jalview.git] / src / jalview / gui / AlignViewport.java

2022-12-14	Jim Procter	Merge branch 'develop' into update_212_Dec_merge_with_2...	blob \| commitdiff
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2022-03-08	Jim Procter	JAL-3438 spotless for 2.11.2.0	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 better placement of call to notifyFeaturesChan...	blob \| commitdiff \| diff to current
2021-09-02	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-08-27	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch	blob \| commitdiff \| diff to current
2020-08-17	Jim Procter	JAL-3490 merged with 2.11.2 develop	blob \| commitdiff \| diff to current
2020-07-31	Ben Soares	Merge branch 'releases/Release_2_11_1_Branch' into...	blob \| commitdiff \| diff to current
2020-06-29	Jim Procter	Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...	blob \| commitdiff \| diff to current
2020-06-09	BobHanson	JAL-3446 from applet; JAL-3374	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Jalview.java	blob \| commitdiff \| diff to current
2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff \| diff to current
2020-04-23	Jim Procter	Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-27	Jim Procter	Merge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy	blob \| commitdiff \| diff to current
2020-02-21	Jim Procter	Merge branch 'develop' into features/JAL-3187_uitweaks	blob \| commitdiff \| diff to current
2020-02-19	Jim Procter	JAL-3538 anti-aliasing enabled by default	blob \| commitdiff \| diff to current
2020-02-17	Jim Procter	JAL-3187 JAL-3533 JAL-3535 set feature settings dialog...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 better placement of call to notifyFeaturesChan...	blob \| commitdiff \| diff to current
2020-02-06	gmungoc	JAL-3509 coerce RESNUM to hidden (really) after fetchin...	blob \| commitdiff \| diff to current
2019-12-09	gmungoc	JAL-3490 pull up getViewAsVisibleContigs to base class...	blob \| commitdiff \| diff to current
2019-09-26	Jim Procter	JAL-3070 JAL-3066 JAL-2808 allow feature filter definit...	blob \| commitdiff \| diff to current
2019-08-19	gmungoc	JAL-3412 calculateIdWidth - more consistency, constants...	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-07-10	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	blob \| commitdiff \| diff to current
2019-06-24	Jim Procter	JAL-3330 mergeFeatureStyles - needs test coverage	blob \| commitdiff \| diff to current
2019-06-05	tva	JAL-3285 add unmerged features to AlignViewport	blob \| commitdiff \| diff to current
2019-06-04	Jim Procter	Merge branch 'develop' into developtomchmmer	blob \| commitdiff \| diff to current
2019-04-18	hansonr	Corrects incorrect calls to ViewportRanges.setEndSeq()	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-07	gmungoc	JAL-2250 default Apply Colour to All Groups selected	blob \| commitdiff \| diff to current
2019-03-01	gmungoc	Merge branch 'feature/JAL-3093wrappedModeTooltips'...	blob \| commitdiff \| diff to current
2018-12-18	gmungoc	JAL-3048 DialogRunnerI reduced to minimal implementation	blob \| commitdiff \| diff to current
2018-12-10	gmungoc	JAL-3048 wip externalise trigger from RunResponse	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-12-06	gmungoc	JAL-3048 response() renamed addResponse(); checkstyle...	blob \| commitdiff \| diff to current
2018-12-06	gmungoc	JAL-3048 explicit instead of default 'No' response...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-10-04	gmungoc	JAL-3132 set status message when over sequence id or...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-08-27	hansonr	JAL-3026 alignmentFrame.statusBar.setText -> .setStatus	blob \| commitdiff \| diff to current
2018-07-03	Jim Procter	JAL-3048 openLinkedAlignment refactor to use dialogRunn...	blob \| commitdiff \| diff to current
2018-05-31	Jim Procter	Merge branch 'spike/JAL-1950_hmmer3client' into feature...	blob \| commitdiff \| diff to current
2018-05-31	Jim Procter	Merge branch 'develop' into spike/JAL-1950_hmmer3client	blob \| commitdiff \| diff to current
2018-03-30	gmungoc	JAL-2939 field/method naming more consistent	blob \| commitdiff \| diff to current
2018-03-26	gmungoc	JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo	blob \| commitdiff \| diff to current
2018-03-16	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2018-03-07	gmungoc	JAL-2629 storage and lifecycle of alignment/group HMM...	blob \| commitdiff \| diff to current
2018-03-01	gmungoc	JAL-2629 revising hmmer annotation updating (wip)	blob \| commitdiff \| diff to current
2018-02-20	gmungoc	Merge branch 'develop' into features/mchmmer	blob \| commitdiff \| diff to current
2017-11-21	kiramt	JAL-2759 Remove getVisibleBlocksIterator call	blob \| commitdiff \| diff to current
2017-11-21	kiramt	Merge branch 'develop' into feature/JAL-2759	blob \| commitdiff \| diff to current
2017-11-15	gmungoc	JAL-2835 spike updated with latest	blob \| commitdiff \| diff to current
2017-11-08	kiramt	Merge branch 'develop' into feature/JAL-2759	blob \| commitdiff \| diff to current
2017-11-08	Jim Procter	Merge branch 'develop' into bug/JAL-2225mapMultipleChains	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-29	kiramt	JAL-2674 finish with iterators for now	blob \| commitdiff \| diff to current
2017-09-28	kiramt	JAL-2647 more iterators	blob \| commitdiff \| diff to current
2017-09-14	gmungoc	JAL-2727 null more fields in AlignmentViewport.dispose...	blob \| commitdiff \| diff to current
2017-09-05	gmungoc	JAL-2225 unused collateForPdb removed	blob \| commitdiff \| diff to current
2017-08-21	Jim Procter	Merge branch 'develop' into trial_merge/JAL-1950 spike/JAL-1950_hmmer3client	blob \| commitdiff \| diff to current
2017-08-18	TZVanaalten	Merge branch 'develop' into features/hmmer	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-08-10	TZVanaalten	JAL-2629 hmmalign now correctly creates a new frame	blob \| commitdiff \| diff to current
2017-08-04	TZVanaalten	JAL-2629 multiple HMMs can now be dropped onto an alignment	blob \| commitdiff \| diff to current
2017-08-02	TZVanaalten	JAL-2599 fix for information annotation buttons	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-14	TZVanaalten	add partial button fix to annotation and statistics... features/hmmer_statistics	blob \| commitdiff \| diff to current
2017-06-30	gmungoc	JAL-2602 pulled up identical methods to base class	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-2602 check for null or empty description when copyi...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 More working split panel + new scrolling	blob \| commitdiff \| diff to current
2017-04-28	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 use constant for preference token	blob \| commitdiff \| diff to current
2017-04-27	Jim Procter	JAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-30	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-03-23	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-03-21	kiramt	JAL-2388 Made ViewportRanges final	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	blob \| commitdiff \| diff to current
2017-03-08	gmungoc	JAL-2435 copy font changes across split screen	blob \| commitdiff \| diff to current
2017-03-07	kiramt	JAL-2388 Missed commit	blob \| commitdiff \| diff to current
2017-03-06	kiramt	JAL-2388 Dependency tidy	blob \| commitdiff \| diff to current
2017-03-06	gmungoc	JAL-2428 separate TreeModel from TreeBuilder/NJTree...	blob \| commitdiff \| diff to current
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