Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui / AlignViewport.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop
2020-08-27 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop
2020-07-31 Ben SoaresMerge branch 'releases/Release_2_11_1_Branch' into...
2020-06-29 Jim ProcterMerge branch 'bug/JAL-3490findSpanHiddenGaps' into...
2020-06-09 BobHansonJAL-3446 from applet; JAL-3374
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider...
2020-06-02 BobHansonJAL-3626 from JAL-3253-applet Jalview.java
2020-05-18 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2020-04-23 Jim ProcterMerge branch 'develop' into alpha/JAL-3362_Jalview_212_...
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop
2020-02-27 Jim ProcterMerge branch 'bug/JAL-3412idWidthDiscrepancy' into... bug/JAL-3412idWidthDiscrepancy
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks
2020-02-19 Jim ProcterJAL-3538 anti-aliasing enabled by default
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog...
2020-02-06 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
2020-02-06 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin...
2019-12-09 gmungocJAL-3490 pull up getViewAsVisibleContigs to base class...
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit...
2019-08-19 gmungocJAL-3412 calculateIdWidth - more consistency, constants...
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage
2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport
2019-06-04 Jim ProcterMerge branch 'develop' into developtomchmmer
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq()
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into...
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'...
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle...
2018-12-06 gmungocJAL-3048 explicit instead of default 'No' response...
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH...
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-10-04 gmungocJAL-3132 set status message when over sequence id or...
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit...
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus
2018-07-03 Jim ProcterJAL-3048 openLinkedAlignment refactor to use dialogRunn...
2018-05-31 Jim ProcterMerge branch 'spike/JAL-1950_hmmer3client' into feature...
2018-05-31 Jim ProcterMerge branch 'develop' into spike/JAL-1950_hmmer3client
2018-03-30 gmungocJAL-2939 field/method naming more consistent
2018-03-26 gmungocJAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
2018-03-16 gmungocMerge branch 'develop' into trialMerge
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM...
2018-03-01 gmungocJAL-2629 revising hmmer annotation updating (wip)
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-08 Jim ProcterMerge branch 'develop' into bug/JAL-2225mapMultipleChains
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-29 kiramtJAL-2674 finish with iterators for now
2017-09-28 kiramtJAL-2647 more iterators
2017-09-14 gmungocJAL-2727 null more fields in AlignmentViewport.dispose...
2017-09-05 gmungocJAL-2225 unused collateForPdb removed
2017-08-21 Jim ProcterMerge branch 'develop' into trial_merge/JAL-1950 spike/JAL-1950_hmmer3client
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi...
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency...
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-05-05 kiramtMerge remote-tracking branch
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling
2017-04-28 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-04-27 Jim ProcterJAL-1933 use constant for preference token
2017-04-27 Jim ProcterJAL-1933 showOccupancy applet parameter and SHOW_OCCUPA...
2017-04-24 kiramtMerge remote-tracking branch
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree...
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices
2017-03-21 kiramtJAL-2388 Made ViewportRanges final
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport...
2017-03-08 gmungocJAL-2435 copy font changes across split screen
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree...
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