JAL-3210 merge. j2sclasslist_jmol seems to be removed
[jalview.git] / src / jalview / gui / AlignViewport.java
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread...
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-07-01 gmungocJAL-1619 align the added sequences to match what they...
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb()
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-11 James ProcterJAL-1690 make splitframe enabled by default
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure...
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop)
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
2014-11-25 Charles Ofoegbumerge commit
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-14 Charles Ofoegbuhouse keeping features/JAL-1541_BioJsMSAViewer-export-option
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-14 Charles OfoegbuHouse keeping
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-24 jprocterformatting
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
2012-07-08 jprocterJAL-976 - storing service parameters on the view model
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren...
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta...
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati...
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to...
2011-10-21 jprocterRefactored alignment viewport to use common base, exten...
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet
2011-10-11 jprocternormalised logo rendering (JAL-958)
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align...
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if...
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi...
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure...
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at...
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java...
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860)
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-02-18 jprocterJAL-574
2011-02-04 jprocterjavadoc
2011-01-18 jprocterrefactored VamsasListener to allow the source of the...
2010-12-09 jprocterrefactored and added methods for getting richer Alignme...
2010-11-12 jprocterpatch for JAL-699 so conservation/consensus threads...
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
2010-08-20 jprocteravoid race condition by setting sequence logo flag...
2010-06-11 jprocterpatched for JAL-531 - only display full symbol distribu...
2010-06-08 jprocterfollowSelections flag now set via user preferences...
2010-04-30 jprocterjalview 2.5 release banner
2010-04-29 jprocternew selection manipulation method
2010-04-14 jprocterprofile visualizations are now logos
2010-04-05 jprocterjavadoc
2010-03-30 jproctergroup autoannotation and consensus display settings
2009-10-14 jprocterquick fix for nullpointer in column selection when...
2009-08-21 jprocterviewport setting for displaying sequence logos
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