JAL-1632 add score model params to PCAModel and PCA constructors
[jalview.git] / src / jalview / gui / AlignViewport.java
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 license header
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-08-30 gmungocMerge branch 'develop' into features/filetypeEnum
2016-08-24 gmungocJAL-1854 removed pointless method override
2016-07-11 gmungocfile format enum wip changes
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output...
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during...
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding...
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings'
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon...
2015-09-22 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from...
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead...
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread...
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-07-01 gmungocJAL-1619 align the added sequences to match what they...
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb()
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-11 James ProcterJAL-1690 make splitframe enabled by default
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit...
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure...
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop)
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation...
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot...
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh...
2015-01-10 Charles OfoegbuJAL-1553 merge commit
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati...
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by...
2014-11-25 Charles Ofoegbumerge commit
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
2014-11-14 Charles Ofoegbuhouse keeping features/JAL-1541_BioJsMSAViewer-export-option
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-14 Charles OfoegbuHouse keeping
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-24 jprocterformatting
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
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