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JAL-2089 fix broken help link
[jalview.git] / src / jalview / gui / AlignViewport.java
2016-09-22 gmungocJAL-2216 new dispose() method to null references blob | commitdiff
2016-08-24 gmungocJAL-1854 removed pointless method override blob | commitdiff | diff to current
2016-06-08 tcofoegbuJAL-1479 JAL- Fix to eradicate duplicate mapping output... blob | commitdiff | diff to current
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... blob | commitdiff | diff to current
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI blob | commitdiff | diff to current
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin... blob | commitdiff | diff to current
2015-12-22 gmungocJAL-653 realise virtual mappings and align when adding... blob | commitdiff | diff to current
2015-12-03 gmungocJAL-653 code tidy / tests for 'realise gff mappings' blob | commitdiff | diff to current
2015-11-30 gmungocJAL-653 (experimental) 'realise' dummy sequences in... blob | commitdiff | diff to current
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... blob | commitdiff | diff to current
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-08-27 gmungocJAL-1830 refactored so no jalview.gui references from... blob | commitdiff | diff to current
2015-08-26 gmungocJAL-1830 dropped reference counts for mappings, instead... blob | commitdiff | diff to current
2015-08-17 gmungocJAL-1829 JAL-1830 refactoring for correct mapping ... blob | commitdiff | diff to current
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... blob | commitdiff | diff to current
2015-08-05 Jim ProcterJAL-1822 create dataset sequences if they aren’t alread... blob | commitdiff | diff to current
2015-07-03 gmungocMerge branch 'develop' into features/JAL-892varnaToProject blob | commitdiff | diff to current
2015-07-01 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate blob | commitdiff | diff to current
2015-07-01 gmungocJAL-1619 align the added sequences to match what they... blob | commitdiff | diff to current
2015-06-30 gmungocJAL-1691 trackpad scrolling goes to full width even... blob | commitdiff | diff to current
2015-06-26 gmungocMerge branch 'develop' into features/JAL-892varnaToProject blob | commitdiff | diff to current
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate blob | commitdiff | diff to current
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... blob | commitdiff | diff to current
2015-06-18 gmungocJAL-1695 default ENABLE_SPLIT_FRAME to true for desktop blob | commitdiff | diff to current
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile blob | commitdiff | diff to current
2015-06-10 tcofoegbuJAL-1641 updated applet version blob | commitdiff | diff to current
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb() blob | commitdiff | diff to current
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... blob | commitdiff | diff to current
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... blob | commitdiff | diff to current
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure... blob | commitdiff | diff to current
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled blob | commitdiff | diff to current
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... blob | commitdiff | diff to current
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop) blob | commitdiff | diff to current
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences... blob | commitdiff | diff to current
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... blob | commitdiff | diff to current
2015-01-20 Charles OfoegbuJAL-1553 enhancement of column selection by annotation... blob | commitdiff | diff to current
2015-01-13 Charles OfoegbuMerge branch 'features/JAL-1553_select-columns-by-annot... blob | commitdiff | diff to current
2015-01-13 Charles OfoegbuRefactored AnnotationColumnChoser and AnnotationColorCh... blob | commitdiff | diff to current
2015-01-10 Charles OfoegbuJAL-1553 merge commit blob | commitdiff | diff to current
2015-01-10 Charles OfoegbuJAL-1553 implementation of column selection by annotati... blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-12-05 Charles OfoegbuJAL-1605 merge commit blob | commitdiff | diff to current
2014-12-05 Charles OfoegbuChange the Html export to utilize svg blob | commitdiff | diff to current
2014-11-25 Jim ProcterMerge branch 'bug/JAL-689' into develop blob | commitdiff | diff to current
2014-11-25 Jim Procterpatch for JAL-1599 - annotation row constructed by... blob | commitdiff | diff to current
2014-11-25 Charles Ofoegbumerge commit blob | commitdiff | diff to current
2014-11-25 gmungocJFAL-1594 fix Undo bug; enum EditCommand.Action; basic... blob | commitdiff | diff to current
2014-11-14 Charles Ofoegbuhouse keeping features/JAL-1541_BioJsMSAViewer-export-option blob | commitdiff | diff to current
2014-11-14 Charles OfoegbuMerge branch 'features/JAL-1541_BioJsMSAViewer-export... blob | commitdiff | diff to current
2014-11-14 Charles OfoegbuHouse keeping blob | commitdiff | diff to current
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc blob | commitdiff | diff to current
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva... blob | commitdiff | diff to current
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume... blob | commitdiff | diff to current
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal... blob | commitdiff | diff to current
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc... blob | commitdiff | diff to current
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates... blob | commitdiff | diff to current
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur... blob | commitdiff | diff to current
2014-08-08 j.procter@dundee... JAL-1483 model and api for feature display list on... blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings... blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-09-24 jprocterformatting blob | commitdiff | diff to current
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI blob | commitdiff | diff to current
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re... blob | commitdiff | diff to current
2012-07-08 jprocterJAL-976 - storing service parameters on the view model blob | commitdiff | diff to current
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren... blob | commitdiff | diff to current
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI... blob | commitdiff | diff to current
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... blob | commitdiff | diff to current
2011-10-28 jprocterJAL-969 - refactor initialisation of automatic annotati... blob | commitdiff | diff to current
2011-10-27 jprocter(JAL-969) refactored alignmentViewport base class to... blob | commitdiff | diff to current
2011-10-21 jprocterRefactored alignment viewport to use common base, exten... blob | commitdiff | diff to current
2011-10-14 jprocter(JAL-958) - normalised sequence logo for applet blob | commitdiff | diff to current
2011-10-11 jprocternormalised logo rendering (JAL-958) blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-08-11 janengelhardtJAL-885; hasRNAStructure method was introduced to Align... blob | commitdiff | diff to current
2011-08-10 janengelhardtJAL-885; Structure conservation row is just added if... blob | commitdiff | diff to current
2011-08-08 janengelhardtJAL-891; structure logo is adapted to two char's; Missi... blob | commitdiff | diff to current
2011-08-08 janengelhardtJAL-891; sequence logos are available on structure... blob | commitdiff | diff to current
2011-07-31 janengelhardtJAL-885; StructureConservation row is displayed at... blob | commitdiff | diff to current
2011-07-29 janengelhardtJAL-885; Implementation of StructureFrequency.java... blob | commitdiff | diff to current
2011-07-09 jprocterrefactored from PopupMenu (for JAL-860) blob | commitdiff | diff to current
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... blob | commitdiff | diff to current
2011-02-18 jprocterJAL-574 blob | commitdiff | diff to current
2011-02-04 jprocterjavadoc blob | commitdiff | diff to current
2011-01-18 jprocterrefactored VamsasListener to allow the source of the... blob | commitdiff | diff to current
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