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Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui / AppJmol.java
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... blob | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... blob | commitdiff | diff to current
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 blob | commitdiff | diff to current
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... blob | commitdiff | diff to current
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... blob | commitdiff | diff to current
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... blob | commitdiff | diff to current
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur... blob | commitdiff | diff to current
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... blob | commitdiff | diff to current
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... blob | commitdiff | diff to current
2020-06-03 BobHansonJAL-3446 from JAL-3253 ApplicationSingletonProvider... blob | commitdiff | diff to current
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... blob | commitdiff | diff to current
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... blob | commitdiff | diff to current
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands... blob | commitdiff | diff to current
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol blob | commitdiff | diff to current
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class blob | commitdiff | diff to current
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... blob | commitdiff | diff to current
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... blob | commitdiff | diff to current
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving... blob | commitdiff | diff to current
2020-02-21 gmungocJAL-2422 tidy of methods and parameters blob | commitdiff | diff to current
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands... blob | commitdiff | diff to current
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... blob | commitdiff | diff to current
2020-01-31 gmungocJAL-2422 temporary hacks removed; use hex colours for... blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows blob | commitdiff | diff to current
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... blob | commitdiff | diff to current
2018-12-25 hansonrbetter Jmol help link blob | commitdiff | diff to current
2018-08-27 hansonrJAL-3026 Jmol functioning; some issues blob | commitdiff | diff to current
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol... blob | commitdiff | diff to current
2018-04-12 gmungocJAL-1847 minor post-review updates blob | commitdiff | diff to current
2018-04-12 gmungocJAL-2944 tidies for review comments blob | commitdiff | diff to current
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl... blob | commitdiff | diff to current
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods... blob | commitdiff | diff to current
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine... blob | commitdiff | diff to current
2017-10-27 gmungocJAL-1793 spike branch updated to latest blob | commitdiff | diff to current
2017-10-10 Jim ProcterJAL-2392 formatting blob | commitdiff | diff to current
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j... blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(... blob | commitdiff | diff to current
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... blob | commitdiff | diff to current
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper... blob | commitdiff | diff to current
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu blob | commitdiff | diff to current
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera blob | commitdiff | diff to current
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane blob | commitdiff | diff to current
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' blob | commitdiff | diff to current
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to... blob | commitdiff | diff to current
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-10-05 Jim ProcterJAL-2189 source formatting blob | commitdiff | diff to current
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;... blob | commitdiff | diff to current
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol blob | commitdiff | diff to current
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch blob | commitdiff | diff to current
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... blob | commitdiff | diff to current
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull... blob | commitdiff | diff to current
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries... blob | commitdiff | diff to current
2015-08-05 Jim ProcterJAL-1821 JAL-1759 make sure we wait around until the... blob | commitdiff | diff to current
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics blob | commitdiff | diff to current
2015-06-30 gmungocJAL-1759 unused field / methods removed blob | commitdiff | diff to current
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI... blob | commitdiff | diff to current
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate blob | commitdiff | diff to current
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11 blob | commitdiff | diff to current
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring blob | commitdiff | diff to current
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries... blob | commitdiff | diff to current
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional... blob | commitdiff | diff to current
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings... blob | commitdiff | diff to current
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... blob | commitdiff | diff to current
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and... blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... blob | commitdiff | diff to current
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) blob | commitdiff | diff to current
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session blob | commitdiff | diff to current
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related blob | commitdiff | diff to current
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project' blob | commitdiff | diff to current
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-12-05 Charles OfoegbuChange the Html export to utilize svg blob | commitdiff | diff to current
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface blob | commitdiff | diff to current
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc blob | commitdiff | diff to current
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure... blob | commitdiff | diff to current
2014-11-12 Charles OfoegbuAdded support for SVG Export blob | commitdiff | diff to current
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-09-19 darolmarJAL-1355 blob | commitdiff | diff to current
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur... blob | commitdiff | diff to current
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure... blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures... blob | commitdiff | diff to current
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