JAL-2668 fix broken factory method for colour scheme
[jalview.git] / src / jalview / gui / AppJmol.java
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-10 Jim ProcterJAL-2392 formatting
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-12 gmungocJAL-2361 extract methods to (re-)build colour menu
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to...
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;...
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be...
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-08-05 Jim ProcterJAL-1821 JAL-1759 make sure we wait around until the...
2015-06-30 gmungocJAL-1759 unused JmolPopup removed, code tidy for generics
2015-06-30 gmungocJAL-1759 unused field / methods removed
2015-06-26 gmungocJAL-1759 changed to non-deprecated Viewer.renderScreenI...
2015-06-26 gmungocMerge branch 'develop' into features/JAL-1759jmolUpdate
2015-06-26 gmungocJAL-1759 updates for Jmol 14.2.14_25.06.11
2015-06-19 tcofoegbuJAL-1270 JUnit to TestNG refactoring
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional...
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-17 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-09-23 darolmarJAL-1355
2014-09-19 darolmarJAL-1355
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-08-29 darolmari18n
2012-11-08 jproctertidy imports
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-03-01 jprocterMerge branch 'Release_2_7_Branch' into develop
2012-02-12 Jim Procter(JAL-1022) reverted to original strategy of escaping...
2012-02-12 Jim ProcterJAL-1025 JAL-1022 use File based equivalence to map...
2011-12-08 jprocter(JAL-1023) ensure filename is properly escaped before...
2011-12-08 jprocterremove commented lines
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_...
2011-09-27 jprocterapply version 2.7 copyright
2011-09-14 jprocterJAL-766 JAL-733 - new alignment->jmol associations...
2011-07-25 janengelhardtStart merging of Laurens Code
2011-07-22 jproctertodo for JAL-860 - associate multiple sequences with...
2011-07-09 jproctermenu item and constructor to open a bunch of structures...
2011-07-04 jprocterjmb isn't created yet, so use another SSM provider
2011-06-23 jprocterjmb isn't created yet, so use another SSM provider
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager...
2011-04-25 jprocterJAL-824 - additional methods to allow jmol colouring...
2011-04-25 jproctertoggle of inclusion/exclusion of views for colouring...
2011-04-22 jprocterformatting
2011-04-22 jprocterremoved useless flag (was always null for button press...
2011-04-22 jprocterJAL-823 and JAL-824 - seqColour no longer the default...
2011-02-28 jprocterexcess imports
2011-02-18 jprocterJAL-777/JAL-641 debugging
2010-11-11 jprocterpatch for JAL-655
2010-09-23 jprocterapply jalview code style
2010-09-23 jprocterJalview 2.6 source licence
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