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[jalview.git] / src / jalview / gui / AppJmol.java

2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff
2016-12-12	gmungoc	JAL-2361 extract methods to (re-)build colour menu	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-13	gmungoc	JAL-2044 increase Jmol file load timeout from 5 to...	blob \| commitdiff \| diff to current
2016-10-11	gmungoc	JAL-2233 reverted changes to Jmol logging levels	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-29	gmungoc	JAL-2213 corrected wait for files to load in Jmol;...	blob \| commitdiff \| diff to current
2016-09-27	gmungoc	JAL-2233 less verbose logging for Jmol	blob \| commitdiff \| diff to current
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-25	gmungoc	JAL-1859 try hoverDelay of 0.1s in Jmol for more respon...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-09-04	Jim Procter	JAL-1847 added AUTOSUPERIMPOSE property which can be...	blob \| commitdiff \| diff to current
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	blob \| commitdiff \| diff to current
2015-08-07	tcofoegbu	JAL-1824 updated caching procedure for pdb entries...	blob \| commitdiff \| diff to current
2015-08-05	Jim Procter	JAL-1821 JAL-1759 make sure we wait around until the...	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1759 unused JmolPopup removed, code tidy for generics	blob \| commitdiff \| diff to current
2015-06-30	gmungoc	JAL-1759 unused field / methods removed	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	JAL-1759 changed to non-deprecated Viewer.renderScreenI...	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	Merge branch 'develop' into features/JAL-1759jmolUpdate	blob \| commitdiff \| diff to current
2015-06-26	gmungoc	JAL-1759 updates for Jmol 14.2.14_25.06.11	blob \| commitdiff \| diff to current
2015-06-19	tcofoegbu	JAL-1270 JUnit to TestNG refactoring	blob \| commitdiff \| diff to current
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	blob \| commitdiff \| diff to current
2015-06-05	gmungoc	JAL-1622 duplicate assignment removed (no functional...	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	JAL-1750 View Mapping scoped to that viewer's mappings...	blob \| commitdiff \| diff to current
2015-04-30	tcofoegbu	JAL-1717 updated the PDBEntry model and updated the...	blob \| commitdiff \| diff to current
2015-03-30	gmungoc	JAL-1596 refactoring to allow unit tests to start and...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	Merge branch 'features/JAL-1588saveChimeraSession'...	blob \| commitdiff \| diff to current
2015-01-26	gmungoc	JAL-1588 restoring saved Chimera session(s)	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current
2015-01-06	gmungoc	JAL-1588 refactoring prior to 'save Chimera project'	blob \| commitdiff \| diff to current
2014-12-22	Jim Procter	Merge: 497958b 68dcaa7	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-12-05	Charles Ofoegbu	Change the Html export to utilize svg	blob \| commitdiff \| diff to current
2014-11-17	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-11-14	Jim Procter	Merge branch 'develop' into JAL-1483_featureBasedTreeCalc	blob \| commitdiff \| diff to current
2014-11-13	Jim Procter	Merge branch 'features/JAL-1469_svg-output-for-figure...	blob \| commitdiff \| diff to current
2014-11-12	Charles Ofoegbu	Added support for SVG Export	blob \| commitdiff \| diff to current
2014-11-12	gmungoc	JAL-1528 bug fixes and adjustments to Chimera interface	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-19	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-08-08	j.procter@dundee...	JAL-1483 move show sequence feature and sequence featur...	blob \| commitdiff \| diff to current
2014-07-02	Jim Procter	JAL-1333 JAL-1527 refactors to create core structure...	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-04-21	Jim Procter	JAL-1476 JAL-1016 avoid NPE messiness if structures...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-11-08	jprocter	tidy imports	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-03-01	jprocter	Merge branch 'Release_2_7_Branch' into develop	blob \| commitdiff \| diff to current
2012-02-12	Jim Procter	(JAL-1022) reverted to original strategy of escaping...	blob \| commitdiff \| diff to current
2012-02-12	Jim Procter	JAL-1025 JAL-1022 use File based equivalence to map...	blob \| commitdiff \| diff to current
2011-12-08	jprocter	(JAL-1023) ensure filename is properly escaped before...	blob \| commitdiff \| diff to current
2011-12-08	jprocter	remove commented lines	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-14	jprocter	JAL-766 JAL-733 - new alignment->jmol associations...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-07-22	jprocter	todo for JAL-860 - associate multiple sequences with...	blob \| commitdiff \| diff to current
2011-07-09	jprocter	menu item and constructor to open a bunch of structures...	blob \| commitdiff \| diff to current
2011-07-04	jprocter	jmb isn't created yet, so use another SSM provider	blob \| commitdiff \| diff to current
2011-06-23	jprocter	jmb isn't created yet, so use another SSM provider	blob \| commitdiff \| diff to current
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	blob \| commitdiff \| diff to current
2011-04-25	jprocter	JAL-824 - additional methods to allow jmol colouring...	blob \| commitdiff \| diff to current
2011-04-25	jprocter	toggle of inclusion/exclusion of views for colouring...	blob \| commitdiff \| diff to current
2011-04-22	jprocter	formatting	blob \| commitdiff \| diff to current
2011-04-22	jprocter	removed useless flag (was always null for button press...	blob \| commitdiff \| diff to current
2011-04-22	jprocter	JAL-823 and JAL-824 - seqColour no longer the default...	blob \| commitdiff \| diff to current
2011-02-28	jprocter	excess imports	blob \| commitdiff \| diff to current
2011-02-18	jprocter	JAL-777/JAL-641 debugging	blob \| commitdiff \| diff to current
2010-11-11	jprocter	patch for JAL-655	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-22	jprocter	jmol update	blob \| commitdiff \| diff to current
2010-09-14	jprocter	streamlined app and applet jmol console + event handlin...	blob \| commitdiff \| diff to current
2010-09-13	jprocter	patched Jmol and code for embedding JmolAppConsole...	blob \| commitdiff \| diff to current
2010-09-08	jprocter	JAL-634 and JAL-635	blob \| commitdiff \| diff to current
2010-08-27	jprocter	refactored seq/str binding methods and ensured that...	blob \| commitdiff \| diff to current
2010-08-27	jprocter	revised sequence/structure binding so one structure...	blob \| commitdiff \| diff to current
2010-08-25	jprocter	init Jmol with 'SmarterJmolAdapter'	blob \| commitdiff \| diff to current
2010-08-20	jprocter	refactor jmol api so it doesn't clash with Swing compon...	blob \| commitdiff \| diff to current
2010-08-18	jprocter	refactor to abstract jmol/jalview binding and applet...	blob \| commitdiff \| diff to current
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