Merge branch 'develop' of https://source.jalview.org/git/jalview into develop
[jalview.git] / src / jalview / gui / Jalview2XML.java
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi...
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset
2016-01-28 gmungocMerge branch 'develop' into JAL-1705_trialMerge
2015-12-22 gmungocJAL-653 hold AlignedCodonFrame collections as list...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB...
2015-09-25 gmungocJAL-1815 restore split frame geometry correctly includi...
2015-09-16 gmungocJAL-1885 small fix to isVersionStringLaterThan plus...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-07-23 Jim ProcterMerge branch 'features/JAL-1759jmolUpdate' into develop
2015-07-23 Jim ProcterJAL-1759 formatting

2015-07-23 Jim ProcterJAL-1759 reinstate changes from bdfde6ef989da0702cef90f...
2015-07-23 Jim ProcterJAL-1759 formatting
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-07 tcofoegbuJAL-1769 fixed output to jalview (.jpv) file in headles...
2015-07-03 gmungocJAL-892 1 second delay for correct initial rendering...
2015-06-30 gmungocJAL=1759 fix Jmol state command bug; remove debug output
2015-06-22 gmungocJAL-892 tidy Varna panel names; JAL-1789 simplified...
2015-06-19 gmungocJAL-892 check viewer is linked to alignment panel on...
2015-06-18 gmungocJAL-892 JAL-1779 save/restore Varna viewer to/from...
2015-06-18 gmungocJAL-1781 annotation.sequenceRef now sequence id not... features/JAL-1781annotationXmlIds
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well
2015-06-10 gmungocMerge remote-tracking branch
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the...
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5...
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor
2015-01-27 gmungocJAL-1588 new class renamed
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'...
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s)
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session...
2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
2015-01-09 gmungocJAL-1588 check Chimera session file still exists
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2015-01-06 gmungocJAL-1588 refactoring prior to 'save Chimera project'
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched
2014-12-09 gmungocJAL-1616 loading of datasets from XML patched Release_2_8_2_Branch
2014-12-05 Charles OfoegbuJAL-1605 merge commit
2014-12-05 Charles OfoegbuChange the Html export to utilize svg
2014-11-27 Jim ProcterMerge branch 'patchJAL-674_offset' into develop
2014-11-27 Jim ProcterJAL-1177 JAL-905 cannot recover sequences from dataset...
2014-11-27 Jim ProcterJAL-674 avoid writing \0 for chain code
2014-11-14 Charles OfoegbuHouse keeping
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-09-23 darolmarJAL-1355
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto...
2014-08-08 j.procter@dundee... JAL-1483 move show sequence feature and sequence featur...
2014-07-02 Jim ProcterJAL-1333 JAL-1527 refactors to create core structure...
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-05-12 Jim ProcterJAL-1397 catch other random version strings
2014-05-12 Jim Procterpatch for regression introduced JAL-1397
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colour...
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct...
2014-05-02 Jim Procterformatting
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset...
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only...
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML...
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset...
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the...
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-10-17 Jim ProcterJAL-1397 make sure annotation colourscheme is up to...
2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour...
2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects...
2012-11-08 jprocterJAL-1193 ensure the 'loadedComplete' method gets called...
2012-11-08 jproctertidy imports
2012-10-24 jprocterJAL-1193 call setLoadingFromArchiveFinished(true) for...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2012-09-06 jprocterJAL-958 flag indicating if visualization settings for...
2012-09-06 jprocterJAL-958 store/recover normalised flag
2012-09-05 jprocterJAL-976 fix AACon name typo in source and GUI
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
2012-08-28 jprocterformatting
2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated...
2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation...
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio...
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params
2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content...
2012-07-08 jproctera209409239 (JAL-976 - add support for storing service...
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