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[jalview.git] / src / jalview / gui / SequenceFetcher.java

2015-08-13	tcofoegbu	JAL-1826 bug fix to select pdb sequence fetcher via...	blob \| commitdiff
2015-06-22	Jim Procter	JAL-1780 JAL-653 Format/AppletFormat import and export...	blob \| commitdiff \| diff to current
2015-06-22	Jim Procter	JAL-653 JAL-1780 reorder imports	blob \| commitdiff \| diff to current
2015-06-04	gmungoc	Clear status bar message when initialisation complete	blob \| commitdiff \| diff to current
2015-03-26	gmungoc	Merge develop to Release_2_8_3_Branch	blob \| commitdiff \| diff to current
2015-03-15	Charles Ofoegbu	JAL-1667 updated test and internationalization messages	blob \| commitdiff \| diff to current
2015-03-06	Jim Procter	JAL-1683 replace year/version strings with tokens in...	blob \| commitdiff \| diff to current
2015-03-04	Charles Ofoegbu	JAL-1668 First version JAL-1668	blob \| commitdiff \| diff to current
2015-03-02	Charles Ofoegbu	house keeping	blob \| commitdiff \| diff to current
2015-02-26	Charles Ofoegbu	JAL-1667 PDBe Search Interface implementation	blob \| commitdiff \| diff to current
2015-02-19	gmungoc	JAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor	blob \| commitdiff \| diff to current
2014-12-15	Jim Procter	JAL-1620 version bump and release notes	blob \| commitdiff \| diff to current
2014-09-26	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-09-23	darolmar	JAL-1355	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 source formatting	blob \| commitdiff \| diff to current
2014-06-06	Jim Procter	JAL-1517 fix copyright for 2.8.2	blob \| commitdiff \| diff to current
2014-06-05	Jim Procter	JAL-1517 update copyright to version 2.8.2	blob \| commitdiff \| diff to current
2014-05-22	Jim Procter	JAL-1503 update version in GPL header	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...	blob \| commitdiff \| diff to current
2014-02-03	Jim Procter	Merge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge	blob \| commitdiff \| diff to current
2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff \| diff to current
2013-12-25	darolmar	JAL-1355 (basic i18n support)	blob \| commitdiff \| diff to current
2013-08-29	darolmar	i18n	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-04	jprocter	Merge branch 'develop' into Release_2_8_Branch	blob \| commitdiff \| diff to current
2012-10-04	jprocter	JAL-1064 JAL-671 make sure all buttons are disabled...	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-02	jprocter	JAL-1062 use matching region or first section of sequen...	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	JAL-1097 - ensure replace comma for semicolon always...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	JAL-1061,JAL-1075 - first pass at implementing sequence...	blob \| commitdiff \| diff to current
2012-05-14	jprocter	clean up old commented code	blob \| commitdiff \| diff to current
2012-04-20	jprocter	JAL-1064 JAL-671 - add tree based database dialog as...	blob \| commitdiff \| diff to current
2012-03-30	jprocter	Merge branch 'JAL-972-dasobert-to-jdas' into JAL-972...	blob \| commitdiff \| diff to current
2012-02-29	jprocter	tidy imports and switch over to use das source registry API	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-14	jprocter	JAL-934 - refactor to use label font functions	blob \| commitdiff \| diff to current
2011-08-17	jprocter	avoid NPE race condition when several threads waiting...	blob \| commitdiff \| diff to current
2011-07-08	jprocter	open each query result from an alignment datasource...	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-22	jprocter	Fix and documentation for JAL-657	blob \| commitdiff \| diff to current
2010-09-19	jprocter	make sure only one sequence datasource initialization...	blob \| commitdiff \| diff to current
2010-06-29	jprocter	catch OOM earlier * JAL-595	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2009-06-24	jprocter	can use whitespace, comma or semicolon to separate IDs	blob \| commitdiff \| diff to current
2009-06-08	jprocter	apply gpl development license	blob \| commitdiff \| diff to current
2009-01-07	jprocter	check for features on the retrieved sequences	blob \| commitdiff \| diff to current
2008-12-05	jprocter	support for multiple accession retrieval from a databas...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-26	jprocter	added singleton access method to retrieve the latest...	blob \| commitdiff \| diff to current
2008-08-15	jprocter	dialog size on macs	blob \| commitdiff \| diff to current
2008-08-15	jprocter	increase height of dialog	blob \| commitdiff \| diff to current
2008-08-05	jprocter	ensure das sequence sources are refreshed when das...	blob \| commitdiff \| diff to current
2008-08-04	jprocter	pfam seed and full alignment retrieval and nicer orderi...	blob \| commitdiff \| diff to current
2008-08-01	jprocter	new SequenceFetcher gui and visual delay indication...	blob \| commitdiff \| diff to current
2008-07-31	jprocter	use canonical DbSource name in GUI box, and ensure...	blob \| commitdiff \| diff to current
2007-12-21	jprocter	sequence db fetcher metadata for multiple sequence...	blob \| commitdiff \| diff to current
2007-11-16	jprocter	refactored ebi soap client and AbstractSequenceFetcher...	blob \| commitdiff \| diff to current
2007-10-26	jprocter	use new utility class for platform info	blob \| commitdiff \| diff to current
2007-08-22	jprocter	quick fix for exceptions due to invalid embl refs	blob \| commitdiff \| diff to current
2007-07-13	jprocter	pickmanager on sequence and alignment position, vamsas...	blob \| commitdiff \| diff to current
2007-05-03	amwaterhouse	remove system.out	blob \| commitdiff \| diff to current
2007-05-02	amwaterhouse	Allow expansion of textarea for many sequence input	blob \| commitdiff \| diff to current
2007-04-04	amwaterhouse	Throw exception if pdb result size is zero	blob \| commitdiff \| diff to current
2007-03-19	jprocter	retrieve and parse EMBL records to view exons.	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-19	jprocter	reoganization of PDB sequence fetching for sequence...	blob \| commitdiff \| diff to current
2007-01-18	amwaterhouse	File Parsing returns Alignments, not Sequence[]	blob \| commitdiff \| diff to current
2006-12-21	amwaterhouse	remove unnecessary import	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-11-28	jprocter	EBI web service interface update (and SequenceFetcher...	blob \| commitdiff \| diff to current
2006-10-05	amwaterhouse	Multiple Views	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	Add uniprot DBref	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	WRITEABLE_FORMATS and READABLE_FORMATS string []	blob \| commitdiff \| diff to current
2006-07-25	amwaterhouse	pdb fetchDataAsFile	blob \| commitdiff \| diff to current
2006-06-23	amwaterhouse	DBRefFetcher replaces SequenceFeatureFetcher	blob \| commitdiff \| diff to current
2006-06-15	amwaterhouse	Wrap alignment moved to alignFrame	blob \| commitdiff \| diff to current
2006-06-09	amwaterhouse	Retrieve multiple EMBL ids	blob \| commitdiff \| diff to current
2006-06-08	jprocter	Introduced DbRefEntry to DasSourceCoordinateSystem...	blob \| commitdiff \| diff to current
2006-06-07	amwaterhouse	Wrap alignment added to preferences	blob \| commitdiff \| diff to current
2006-04-13	amwaterhouse	showInternalMessage jdk1.5 bug	blob \| commitdiff \| diff to current
2006-04-10	amwaterhouse	Fixed protein desc bug	blob \| commitdiff \| diff to current
2006-03-13	jprocter	bug fix for 0013013	blob \| commitdiff \| diff to current
2006-03-08	amwaterhouse	IdentifyFile should not be static	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Use add seq feature instead of replacing existing features	blob \| commitdiff \| diff to current
2006-02-08	amwaterhouse	parseResult takes the title as string. usually null	blob \| commitdiff \| diff to current
2006-02-03	amwaterhouse	Retrieves PFAM alignments	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	Cancel button is now close button	blob \| commitdiff \| diff to current
2006-01-12	jprocter	DBRefEntry made for sequences retrieved from the PDB	blob \| commitdiff \| diff to current
2006-01-12	jprocter	<No Comment Entered>	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Check for null StringBuffer in getPDB	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Check for null StringBuffer in getPDB	blob \| commitdiff \| diff to current
2005-12-09	jprocter	fixed pdbentry creation and multiple uniprot or pdb...	blob \| commitdiff \| diff to current
2005-12-08	jprocter	context dependent title for when called from desktop...	blob \| commitdiff \| diff to current
2005-12-08	jprocter	added some error checking and instruction dialogs	blob \| commitdiff \| diff to current
2005-12-07	amwaterhouse	License added to new files	blob \| commitdiff \| diff to current
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