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JAL-3931 remove % and - from ids so Pymol doesn’t strip them out and truncate the...
[jalview.git] / src / jalview / io / AnnotationFile.java
2021-09-16 gmungocJAL-3779 apply properties to all groups with given... blob | commitdiff
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-04-17 gmungocJAL-3026 fix bug loading Jalview Project (in Java) blob | commitdiff | diff to current
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... blob | commitdiff | diff to current
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... blob | commitdiff | diff to current
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 blob | commitdiff | diff to current
2017-06-09 gmungocJAL-2446 merged to spike branch blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 Hidden columns regions can be output to string... blob | commitdiff | diff to current
2017-06-07 kiramtJAL-2591 simplifying hidden columns usage blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch blob | commitdiff | diff to current
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into blob | commitdiff | diff to current
2017-05-01 gmungocJAL-2489 JAL-2371 reinstate calls to blob | commitdiff | diff to current
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop blob | commitdiff | diff to current
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... blob | commitdiff | diff to current
2017-01-06 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... blob | commitdiff | diff to current
2017-01-06 gmungocJAL-2360 findColour() with no args removed from ColourS... blob | commitdiff | diff to current
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI blob | commitdiff | diff to current
2016-12-16 Jim ProcterJAL-2360 report line number when threshold cannot be... blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 getColour() renamed to getColourScheme(),... blob | commitdiff | diff to current
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, blob | commitdiff | diff to current
2016-11-25 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported... blob | commitdiff | diff to current
2015-08-10 Jim ProcterMerge branch 'release/2_9_documentation' into develop blob | commitdiff | diff to current
2015-07-23 Jim ProcterJAL-1819 commented out debugging message to stderr bug/JAL-1819_isNaN blob | commitdiff | diff to current
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! blob | commitdiff | diff to current
2015-06-30 Jim ProcterJAL-1682 JAL-1645 remove references to 2.8.3 blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim Procterreassign features already created/documented for 2... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour... blob | commitdiff | diff to current
2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files... blob | commitdiff | diff to current
2015-01-18 Jim ProcterJAL-1628 formatting and javadoc blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-04-21 Jim Procterfix for JAL-1478 blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-06-21 Jim ProcterJAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF... blob | commitdiff | diff to current
2013-06-21 Jim ProcterJAL-1294 JAL-1325 store graphline for individual annota... blob | commitdiff | diff to current
2013-05-24 Jim Procterpatch for JAL-1300 fixes JAL-1294: read and write COMBI... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1299 fix: ensure a new graphGroup is created if... blob | commitdiff | diff to current
2013-05-24 Jim Procterfix for JAL-1297: COMBINE output now follows specificat... blob | commitdiff | diff to current
2013-05-24 Jim ProcterJAL-1070 - [ not a real patch ] - include offending... blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... blob | commitdiff | diff to current
2011-10-21 jproctertodo blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen... blob | commitdiff | diff to current
2011-01-05 jprocterJAL-727 blob | commitdiff | diff to current
2010-12-15 jproctermore accurate determination of annotation modification blob | commitdiff | diff to current
2010-12-15 jprocterrefactored key calc for hash to separate function blob | commitdiff | diff to current
2010-11-14 jprocterimport annotation file from datasource blob | commitdiff | diff to current
2010-09-23 jprocterapply jalview code style blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-06-06 jprocterpatch for JAL-542 blob | commitdiff | diff to current
2010-06-03 jprocterpatch and error reports re JAL-554 blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2010-04-28 jproctergroup/annotation association blob | commitdiff | diff to current
2010-04-23 jprocterskips any annotation that appears to be identical to... blob | commitdiff | diff to current
2010-04-23 jprocternext attempt for Bug #36198 - appears to work reproducibly blob | commitdiff | diff to current
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday. blob | commitdiff | diff to current
2010-03-22 jprocterSee note in Mantis bug #55537 : inconsistency between... blob | commitdiff | diff to current
2010-03-12 jprocter1.1 compatibility blob | commitdiff | diff to current
2010-03-11 jprocternew ROWPROPERTIES statement for setting an individual... blob | commitdiff | diff to current
2010-01-28 jprocterquick fix for very broken checkin - see Mantis bug... blob | commitdiff | diff to current
2010-01-28 jproctermore rigorous annotation row content check to limit... blob | commitdiff | diff to current
2009-09-22 jprocterallow the display character below a graph to be explici... blob | commitdiff | diff to current
2009-07-24 jproctertodo blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2009-02-06 jproctershowUnconserved IO blob | commitdiff | diff to current
2008-11-04 jprocterbeginning of implementation of new properties for hide... blob | commitdiff | diff to current
2008-09-24 jprocterfixed sequence associated annotation reading bug where... blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation... blob | commitdiff | diff to current
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat... blob | commitdiff | diff to current
2008-07-18 jproctercomment blob | commitdiff | diff to current
2008-07-18 jprocterannotation file format updated to take idColour and... blob | commitdiff | diff to current
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