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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
/
src
/
jalview
/
io
/
AppletFormatAdapter.java
2020-06-02
BobHanson
JAL-3446 from JAL-3253 AppletFormatAdapter not fixed
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
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diff to current
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
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diff to current
2018-08-21
hansonr
mc_view references were MCview
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2018-07-23
gmungoc
JAL-3056 suppress menu options, and repoint Help, for...
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diff to current
2018-07-20
gmungoc
JAL-3048 revised AlignExportSettings dialog with respon...
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diff to current
2018-06-28
hansonr
JAL-3032 DND enabled; additional io changes for File...
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diff to current
2018-06-27
hansonr
JAL-3032 part2 local file reading by JFileChooser
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diff to current
2018-06-23
hansonr
JAL-3026 JDesktop/JInternalFrames support + relative...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-08-16
Jim Procter
JAL-2418 source formatting
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diff to current
2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-05-31
tcofoegbu
Fixed failing tests
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diff to current
2017-01-11
gmungoc
JAL-2344 separated AlignmentFileI into AlignmentFileRea...
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diff to current
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
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2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
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diff to current
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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diff to current
2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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diff to current
2016-11-24
gmungoc
Further tweaks to get tests passing
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diff to current
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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diff to current
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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diff to current
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2016-09-23
tcofoegbu
JAL-2164 JAL-1919 fixed failed revert commit
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2016-09-16
gmungoc
JAL-2164 removed unused parameters from JmolParser...
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diff to current
2016-09-13
tcofoegbu
Revert "JAL-2164 JAL-1919 disabled and removed PDB...
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diff to current
2016-09-13
tcofoegbu
JAL-2164 JAL-1919 disabled and removed PDB file parser...
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diff to current
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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2016-07-26
tcofoegbu
JAL-2157 bugfix for issues from enum refactoring
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2016-07-25
tcofoegbu
JAL-2157 bugfix for regression from commit 82a6c8e2e25b...
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2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-07-19
tcofoegbu
JAL-1919 set default structure file format to mmCIF...
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commitdiff
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diff to current
2016-07-18
gmungoc
fileFormat enum wip changes
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commitdiff
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diff to current
2016-07-11
gmungoc
file format enum wip changes
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diff to current
2016-07-08
tcofoegbu
JAL-1919 Fixed failing tests, enabled HETATM processing...
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diff to current
2016-06-30
tcofoegbu
JAL-1919 updated PDBSequenceFetcherTest and JMol parser...
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2016-04-14
gmungoc
JAL-1270 JAL-653 use 'parse immediately' FeaturesFile...
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2016-03-21
tcofoegbu
develop merge
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2016-03-15
tcofoegbu
JAL-1919 refined structure view annotation settings...
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2016-02-25
tcofoegbu
JAL-1919 initial support for mmCIF using JMol API....
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2016-01-21
tcofoegbu
JAL-1919 basic support for importing and viewing mmCIF...
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diff to current
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
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diff to current
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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commitdiff
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diff to current
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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diff to current
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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commitdiff
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diff to current
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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commitdiff
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diff to current
2015-08-18
tcofoegbu
JAL-1835 made BioJSON embedding to html exports configu...
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diff to current
2015-07-21
tcofoegbu
JAL-1443 bugfix to prevent loading of unidentifiable...
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commitdiff
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diff to current
2015-06-30
tcofoegbu
JAL-1641 round trip test/refactoring
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diff to current
2015-06-26
tcofoegbu
JAL-1641 fixed broken functionalities after refactor
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2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfil...
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diff to current
2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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diff to current
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
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diff to current
2015-06-12
tcofoegbu
JAL-1641 refactor
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diff to current
2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
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diff to current
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
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commitdiff
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diff to current
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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commitdiff
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diff to current
2015-05-13
tcofoegbu
Fixed some broken tests
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diff to current
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
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commitdiff
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diff to current
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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commitdiff
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diff to current
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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commitdiff
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diff to current
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
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2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
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diff to current
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
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commitdiff
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diff to current
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
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commitdiff
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diff to current
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
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diff to current
2014-11-06
Charles Ofoegbu
Updated BioJs Html to be capable of launching jalivew
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diff to current
2014-10-15
Jim Procter
JAL-674 always try to extract secondary structure when...
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diff to current
2014-10-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
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diff to current
2014-10-03
Charles Ofoegbu
Integration of David Corsars Phylip File support
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2014-09-26
darolmar
JAL-1355
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2014-09-23
darolmar
JAL-1355
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2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
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diff to current
2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAd...
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diff to current
2014-06-06
Jim Procter
JAL-1517 source formatting
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commitdiff
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diff to current
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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commitdiff
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diff to current
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-06-03
Jim Procter
JAL-690 add .jvp as default jalview project filetype
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-02-18
Jim Procter
Merge branch 'JAL-1445' into develop
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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commitdiff
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2014-01-27
Jim Procter
JAL-1430 mfa added as a known extension for FASTA files
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diff to current
2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
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2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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diff to current
2013-02-13
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
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commitdiff
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diff to current
2013-02-06
jprocter
JAL-1199 refactored stockholm test code from main class...
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commitdiff
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diff to current
2013-02-05
jprocter
formatting
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diff to current
2012-12-17
Natasha
test for output a file in Stockholm format
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commitdiff
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diff to current
2012-12-04
jprocter
JAL-1213 JAL-674 - import a PDB file using Jmol data...
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commitdiff
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diff to current
2012-11-23
Natasha
stockholm file output code developed by Natasha Sherstneva
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commitdiff
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diff to current
2012-11-17
jprocter
formatting
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commitdiff
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diff to current
2012-11-15
jprocter
allow .rnaml as a filename extension
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commitdiff
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diff to current
2012-11-15
jprocter
Merge branch 'develop' into menard
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commitdiff
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2012-10-22
jprocter
Jalview 2.8 Source Header
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commitdiff
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diff to current
2012-10-03
jprocter
formatting
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