JAL-2994 put ‘\’ first in character class clause of regex - otherwise doesn’t compile...
[jalview.git] / src / jalview / io / FileLoader.java
2018-05-29 gmungocJAL-3005 refactor updateRecentlyOpened to enable reuse
2018-04-17 gmungocJAL-2629 choice of hmm profile now a parameter not...
2018-04-16 gmungocJAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
2018-03-30 gmungocJAL-2941 'map hmm to RF' removed pending clarifications
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-01 gmungocJAL-2488 remove finalize methods
2017-08-29 osboxesJAL-2629 HMMs dropped on the alignment now map to the...
2017-08-28 TZVanaaltenJAL-2629 fix issue where HMM would not be added to...
2017-08-25 TZVanaaltenJAL-2629 add multiple options for running hmmbuild...
2017-08-25 TZVanaaltenJAL-2629 fix for NPE caused by incorrect initiation...
2017-08-23 tzvanaaltenJAL-2629 selected HMM is now a sequence, not a HMM
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-17 TZVanaaltenJAL-2629 add documentation to previous work
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-15 tzvanaaltenJAL-2629 fix file loading issues on Mac
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu
2017-08-14 TZVanaaltenJAL-2629 add insert sequence at method on alignment
2017-08-14 TZVanaaltenJAL-2629 fix incorrect gap insertions on HMM sequence
2017-08-13 TZVanaaltenJAL-2629 fix issue where HMM sequences would be too...
2017-08-11 TZVanaaltenJAL-2599 HMMs can now be dropped onto the desktop
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-26 tcofoegbuJAL-2465 Improvement to re-instate storing recently...
2017-05-26 tcofoegbuJAL-2465 fix to prevent files loaded from the system...
2017-05-15 tcofoegbuJAL-2520 improvement to use URL leaf name for creating...
2017-05-09 tcofoegbuJAL-2520 improvement to download and update structure...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-01-11 gmungocJAL-2344 separated AlignmentFileI into AlignmentFileRea...
2017-01-11 gmungocJAL-2344 FileFormats singleton for formats, FileFormatI...
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocJAL-2344 use .equals() to compare FileFormatI objects
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-07-12 gmungocFileFormat enum wip changes
2016-07-11 gmungocfile format enum wip changes
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2015-12-22 gmungocJAL-653 set showSequenceFeatures=true on loading a...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-10-05 Jim ProcterMerge branch 'develop' into Release_2_9_0b1_Branch
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent...
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc...
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-02 gmungocJAL-1355 User error text externalised to message bundle
2015-08-21 tcofoegbuJAL-1443 bug fix for loading pasted alignments from...
2015-08-07 tcofoegbuJAL-1824 updated caching procedure for pdb entries...
2015-07-30 tcofoegbuJAL-1443 modified exception notifications
2015-07-21 tcofoegbuJAL-1443 bugfix to prevent loading of unidentifiable...
2015-07-08 gmungocJAL-1759 merge from develop
2015-07-02 tcofoegbuJAL-1443 data validation for empty content before loadi...
2015-06-30 tcofoegbuJAL-1641 round trip test/refactoring
2015-06-25 Jim ProcterJAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
2015-05-20 tcofoegbuJAL-1541 minor code clean up, and added test for BioJsH...
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-05-11 tcofoegbuJAL-1641 cherry-picked changes into develop compatible...
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop
2014-02-03 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into try_r20b1...
2014-02-03 Jim ProcterMerge branch 'Release_2_8_0b1_Branch' into try_r20b1_merge
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-12-25 darolmarJAL-1355 (basic i18n support)
2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
2013-08-29 darolmari18n
2013-06-07 Jim ProcterMerge branch 'JAL-1161_optimisingAnnotationPanel' into...
2013-05-24 Jim ProcterJAL-381 Desktop.addInternalFrame cannot be called in...
2012-11-17 jprocterformat adapter should return AlignmentI
2012-11-17 jprocterformatting
2012-10-22 jprocterJalview 2.8 Source Header
2012-05-23 jproctertodo: blocked by JAL-1104
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-11-03 jprocterpasted file contents should never be added to the recen...
next