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JAL-2226 new method to search for annotation matching particular description as well...
[jalview.git] / src / jalview / io / FileParse.java
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test blob | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes blob | commitdiff | diff to current
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... blob | commitdiff | diff to current
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick blob | commitdiff | diff to current
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... blob | commitdiff | diff to current
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... blob | commitdiff | diff to current
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... blob | commitdiff | diff to current
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam blob | commitdiff | diff to current
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... blob | commitdiff | diff to current
2019-03-27 hansonrconsolidation of Platform isJS calls blob | commitdiff | diff to current
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... blob | commitdiff | diff to current
2018-06-28 hansonrFileAsBytes blob | commitdiff | diff to current
2018-06-28 hansonrJAL-3032 FileChooser missing correct call to JSToolkit... blob | commitdiff | diff to current
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... blob | commitdiff | diff to current
2018-06-27 hansonrJAL-3026 FileParser for JFileChooser results as ByteArr... blob | commitdiff | diff to current
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser blob | commitdiff | diff to current
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... blob | commitdiff | diff to current
2018-06-22 hansonrfix for no access-control-origin on jalview site blob | commitdiff | diff to current
2018-05-24 gmungocJAL-2997 additional tests blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-08-16 Jim ProcterJAL-2418 source formatting blob | commitdiff | diff to current
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch blob | commitdiff | diff to current
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... blob | commitdiff | diff to current
2016-07-11 gmungocfile format enum wip changes blob | commitdiff | diff to current
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting... blob | commitdiff | diff to current
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_... blob | commitdiff | diff to current
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or... blob | commitdiff | diff to current
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 blob | commitdiff | diff to current
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl blob | commitdiff | diff to current
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... blob | commitdiff | diff to current
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports blob | commitdiff | diff to current
2015-09-02 gmungocJAL-1544 spelling blob | commitdiff | diff to current
2015-06-26 Jim ProcterJAL-1705 - allow a FileParse to be constructed directly... blob | commitdiff | diff to current
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export... blob | commitdiff | diff to current
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about... blob | commitdiff | diff to current
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference... blob | commitdiff | diff to current
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option... blob | commitdiff | diff to current
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... blob | commitdiff | diff to current
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1551 formatting blob | commitdiff | diff to current
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... blob | commitdiff | diff to current
2014-12-15 Jim ProcterJAL-1620 version bump and release notes blob | commitdiff | diff to current
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... blob | commitdiff | diff to current
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support blob | commitdiff | diff to current
2014-09-23 darolmarJAL-1355 blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 source formatting blob | commitdiff | diff to current
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 blob | commitdiff | diff to current
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 blob | commitdiff | diff to current
2014-05-22 Jim ProcterJAL-1503 update version in GPL header blob | commitdiff | diff to current
2014-01-29 Jim ProcterJAL-1432 updated copyright notices blob | commitdiff | diff to current
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens... blob | commitdiff | diff to current
2013-05-13 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... blob | commitdiff | diff to current
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre... blob | commitdiff | diff to current
2012-10-22 jprocterJalview 2.8 Source Header blob | commitdiff | diff to current
2012-10-03 jprocterformatting blob | commitdiff | diff to current
2011-10-10 jprocterupdate author list in license for (JAL-826) blob | commitdiff | diff to current
2011-09-27 jprocterapply version 2.7 copyright blob | commitdiff | diff to current
2011-01-05 jprocterJAL-727 blob | commitdiff | diff to current
2010-12-09 jprocterdataIn.ready() is not a test of data source validity! blob | commitdiff | diff to current
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse... blob | commitdiff | diff to current
2010-11-14 jprocterrefactored protocol parser and allow human readable... blob | commitdiff | diff to current
2010-09-23 jprocterJalview 2.6 source licence blob | commitdiff | diff to current
2010-04-30 jprocterjalview 2.5 release banner blob | commitdiff | diff to current
2009-06-08 jprocterapply gpl development license blob | commitdiff | diff to current
2008-09-04 jproctermerge from 2_4_Release branch blob | commitdiff | diff to current
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing... blob | commitdiff | diff to current
2008-01-29 jprocterFileParse object can be re-used to read different files... blob | commitdiff | diff to current
2007-10-31 jproctererror message associated with an alignment file loading... blob | commitdiff | diff to current
2007-10-11 jprocterpass up the errormessage in the exception when a dataso... blob | commitdiff | diff to current
2007-08-22 jprocteradded facility for sending non-fatal warnings back... blob | commitdiff | diff to current
2007-04-26 jprocterfixed bug in prefix extraction for application blob | commitdiff | diff to current
2007-04-17 jprocterbugfix. blob | commitdiff | diff to current
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource... blob | commitdiff | diff to current
2007-02-07 amwaterhouseFormatting blob | commitdiff | diff to current
2006-08-21 amwaterhouseheader updated blob | commitdiff | diff to current
2006-03-08 amwaterhouseAble to read resources from Zip file blob | commitdiff | diff to current
2005-06-30 amwaterhouseFormatting changes blob | commitdiff | diff to current
2005-06-08 amwaterhouseFormatted source blob | commitdiff | diff to current
2005-06-08 amwaterhouseGPL license added blob | commitdiff | diff to current
2004-11-02 amwaterhouseJalview Imported Sources start blob | commitdiff | diff to current