JAL-1054 Change the rest of the url.openConnection() calls to use the HttpUtils.openC...
[jalview.git] / src / jalview / io / FileParse.java
2024-05-21 Ben SoaresJAL-1054 Change the rest of the url.openConnection...
2024-05-14 Ben SoaresJAL-1054 Also recognise UnknownHostException as a file...
2024-05-14 Ben SoaresJAL-4414 Add a FileNotFoundException when identifying...
2024-05-13 Ben SoaresJAL-1054 Add wrappers for URL.openConnection(), URL...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-05-22 James ProcterJAL-1551 spotless
2023-05-19 James ProcterJAL-1551 spotlessApply
2023-05-19 James ProcterJAL-1551 spotlessApply
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog...
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-01-11 Ben SoaresJAL-3703 fix Gff3 shared InputStream with embedded...
2020-08-21 Jim ProcterJAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored...
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe...
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their...
2020-07-27 gmungocJAL-2656 JAL-3615 check response headers to test for...
2020-07-27 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for...
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in...
2019-03-27 hansonrconsolidation of Platform isJS calls
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon...
2018-06-28 hansonrFileAsBytes
2018-06-28 hansonrJAL-3032 FileChooser missing correct call to JSToolkit...
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File...
2018-06-27 hansonrJAL-3026 FileParser for JFileChooser results as ByteArr...
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative...
2018-06-22 hansonrfix for no access-control-origin on jalview site
2018-05-24 gmungocJAL-2997 additional tests
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-07-11 gmungocfile format enum wip changes
2016-03-23 tcofoegbuJAL-2009 added programmatic custom feature setting...
2016-01-05 gmungocMerge remote-tracking branch 'origin/features/JAL-1705_...
2015-11-21 gmungocJAL-653 JAL-1968 FeaturesFile now handles Jalview or...
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-15 Jim ProcterMerge branch 'develop' into features/JAL-1705_ensembl
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-09-02 gmungocJAL-1544 spelling
2015-06-26 Jim ProcterJAL-1705 - allow a FileParse to be constructed directly...
2015-06-22 Jim ProcterJAL-1780 JAL-653 Format/AppletFormat import and export...
2015-06-18 Jim ProcterJAL-653 JAL-1780 JAL-1543 javadoc and comment about...
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-05-19 tcofoegbuJAL-1641 Further refactoring of JSON export option...
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
2015-01-23 Jim ProcterJAL-1551 formatting
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
2014-12-15 Jim ProcterJAL-1620 version bump and release notes
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip...
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support
2014-09-23 darolmarJAL-1355
2014-06-06 Jim ProcterJAL-1517 source formatting
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2
2014-05-22 Jim ProcterJAL-1503 update version in GPL header
2014-01-29 Jim ProcterJAL-1432 updated copyright notices
2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens...
2013-05-13 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre...
2013-04-12 Jim ProcterJAL-1286 URL stream reader tries to use a GZIPInputStre...
2012-10-22 jprocterJalview 2.8 Source Header
2012-10-03 jprocterformatting
2011-10-10 jprocterupdate author list in license for (JAL-826)
2011-09-27 jprocterapply version 2.7 copyright
2011-01-05 jprocterJAL-727
2010-12-09 jprocterdataIn.ready() is not a test of data source validity!
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse...
2010-11-14 jprocterrefactored protocol parser and allow human readable...
2010-09-23 jprocterJalview 2.6 source licence
2010-04-30 jprocterjalview 2.5 release banner
2009-06-08 jprocterapply gpl development license
2008-09-04 jproctermerge from 2_4_Release branch
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing...
2008-01-29 jprocterFileParse object can be re-used to read different files...
2007-10-31 jproctererror message associated with an alignment file loading...
2007-10-11 jprocterpass up the errormessage in the exception when a dataso...
2007-08-22 jprocteradded facility for sending non-fatal warnings back...
2007-04-26 jprocterfixed bug in prefix extraction for application
2007-04-17 jprocterbugfix.
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource...
2007-02-07 amwaterhouseFormatting
2006-08-21 amwaterhouseheader updated
2006-03-08 amwaterhouseAble to read resources from Zip file
2005-06-30 amwaterhouseFormatting changes
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2004-11-02 amwaterhouseJalview Imported Sources start