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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
io
/
NewickFile.java
2023-09-08
Ben Soares
JAL-4262 Dialog for GUI and WARN for CLI of old style...
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commitdiff
2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2023-05-19
James Procter
JAL-1551 spotlessApply
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2023-04-12
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
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2023-03-17
Ben Soares
JAL-629 All applications System.exits going through...
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2023-02-23
James Procter
JAL-4134 - brutal hack to build a tree clustering colum...
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2023-02-23
James Procter
JAL-4134 - refactor tree calculation code to work with...
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2022-06-06
Jim Procter
JAL-4023 store distances as doubles
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
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2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
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2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
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2019-04-03
hansonr
j2sNative clean-up. Fixes problem with second try of...
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2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-07-11
gmungoc
file format enum wip changes
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-09-23
darolmar
JAL-1355
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2013-06-14
Jim Procter
JAL-1316 compact '' to '
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2013-06-14
Jim Procter
JAL-1316 recognise and extract quoted region as nodename
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2011-10-10
jprocter
update author list in license for (JAL-826)
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commitdiff
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2011-09-27
jprocter
apply version 2.7 copyright
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-04-30
jprocter
jalview 2.5 release banner
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2009-06-08
jprocter
apply gpl development license
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-04-29
jprocter
trial fix for parsing NHX style trees to extract the...
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2008-01-29
jprocter
FileParse object can be re-used to read different files...
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2007-09-14
jprocter
better reproduction of compact newick files (removal...
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2007-09-06
jprocter
bootstrap regex 'fixed' and ugly hack to try and get...
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2007-08-22
jprocter
introduce beginning of bug fix for parsing atv style...
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2007-08-01
jprocter
javadoc
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2007-07-25
jprocter
bugfix for vamsas demo
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2007-02-07
amwaterhouse
Formatting
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2006-08-21
amwaterhouse
header updated
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2005-12-16
jprocter
Todo notes for feature issue: 0011711
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2005-11-18
jprocter
Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...
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2005-09-30
amwaterhouse
Remove redundancy in Eclipse
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2005-06-30
amwaterhouse
Formatting changes
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2005-06-08
amwaterhouse
Formatted source
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2005-06-08
amwaterhouse
GPL license added
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2005-05-25
jprocter
tidied up system.out messages and moved many to stderr.
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2005-03-30
jprocter
Fixed a sensible default leaf distance (for files where...
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2005-03-18
jprocter
Tree io modifications, including support for polytomous...
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2005-03-17
jprocter
Newick/New Hampshire tree format parser and generator.
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