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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
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jalview
/
io
/
VamsasAppDatastore.java
2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-10-19
Ben Soares
JAL-4305 Isolate and unify the Jalview object from...
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2023-08-10
Ben Soares
JAL-629 Change all stdout and stderr output to use...
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2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
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2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
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2020-07-06
gmungoc
JAL-3311 JAL-3141 JAL-3144 tidying obsolete message...
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2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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2017-08-16
Jim Procter
JAL-2418 source formatting
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2017-06-09
gmungoc
JAL-2446 merged to spike branch
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2017-02-27
gmungoc
JAL-1632 similarity options on TreeChooser panel affect...
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2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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2015-12-22
gmungoc
JAL-653 hold AlignedCodonFrame collections as list...
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2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
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2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
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2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
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2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
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2015-08-26
gmungoc
JAL-1830 dropped reference counts for mappings, instead...
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
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2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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2014-12-15
Jim Procter
JAL-1620 version bump and release notes
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2014-09-23
darolmar
JAL-1355
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-05-22
Jim Procter
JAL-1503 update version in GPL header
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2014-01-29
Jim Procter
JAL-1432 updated copyright notices
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2012-10-22
jprocter
Jalview 2.8 Source Header
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2012-10-03
jprocter
formatting
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2012-06-13
jprocter
JAL-1116 - location where vamsas sync failure occurs
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2012-06-13
jprocter
javatidy
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2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
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2011-10-10
jprocter
update author list in license for (JAL-826)
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
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2010-09-23
jprocter
apply jalview code style
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2010-09-23
jprocter
Jalview 2.6 source licence
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-04-29
jprocter
isAligned assertion (bug 0008144)
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2010-04-05
jprocter
javadoc, and unimplemented warning for group associated...
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2009-06-24
jprocter
ensure annotation row height is honoured for new VAMSAS...
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2009-06-12
jprocter
numerous bugfixs (tree panel synchs) and DatastoreRegis...
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2009-06-09
jprocter
fix null pointer when new view created on alignment...
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2009-06-08
jprocter
minor optimization. apply gpl development license
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2008-11-12
jprocter
new viewport IDs and jalview XML storage/sync in vamsas...
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2008-09-04
jprocter
merge from 2_4_Release branch
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2008-08-06
jprocter
extra checks for datasetsequence for when getDbRefs...
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2008-07-11
jprocter
ensure annotationElements in non-graphical annotation...
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2007-11-05
jprocter
refactored syncing of alignment sequences - still buggy
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2007-09-29
jprocter
always update PDBEntry list if DBRefEntries might have...
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2007-09-27
jprocter
modifiable lock check
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2007-09-25
jprocter
added store of undo/redo hash for each alignment so...
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2007-08-23
jprocter
proper vamsas style binding of alignment sequence objec...
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2007-07-25
jprocter
bugfix for vamsas demo
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2007-07-13
jprocter
updated to iscb demo vamsas-client version
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2007-06-17
jprocter
vamsas-client-1.2 schema (mappings and Treenodes) and...
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2007-05-22
jprocter
refactored document objects and bugfix on jvdataset...
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2007-05-18
jprocter
fixed getObject(VorbaId) lookup in vamsas-client
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2007-05-17
jprocter
use of proper vamsas client API by Jalview
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