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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
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src
/
jalview
/
io
/
vamsas
/
2020-06-03
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-03-21
Ben Soares
JAL-3130 Replaced deprecated Class.newInstance() with...
tree
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commitdiff
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2018-06-22
gmungoc
JAL-3032 avoid assignments on the same line as synchronized
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-25
gmungoc
JAL-2557 removal of Sequence.sequenceFeatures
tree
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commitdiff
2017-05-25
gmungoc
JAL-2050 make SequenceFeature.score final, adjust const...
tree
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commitdiff
2017-03-24
gmungoc
JAL-2428 simplify TreeModel constructors, add getOrigin...
tree
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commitdiff
2017-03-24
gmungoc
JAL-1632 TreeChooser renamed CalculationChooser, text...
tree
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commitdiff
2017-03-06
gmungoc
JAL-2428 separate TreeModel from TreeBuilder/NJTree...
tree
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commitdiff
2017-02-17
gmungoc
JAL-2403 constants for "NJ", "AV"
tree
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
tree
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
tree
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commitdiff
2016-09-22
gmungoc
JAL-1421 typed ResidueProperties.propHash; JAL-2176...
tree
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commitdiff
2016-09-01
gmungoc
JAL-1421 add generics to NJTree, refactor recursive...
tree
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commitdiff
2016-01-28
gmungoc
Merge branch 'develop' into JAL-1705_trialMerge
tree
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commitdiff
2015-11-21
gmungoc
JAL-653 JAL-1968 FeaturesFile now handles Jalview or...
tree
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commitdiff
2015-10-16
Jim Procter
JAL-1925 update source version in license
Release_2_9_0b2
tree
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commitdiff
2015-10-15
tcofoegbu
JAL-1479 refactored SequenceI interface - changed getDB...
tree
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commitdiff
2015-10-08
Jim Procter
JAL-1894 update year/version in copyright
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
tree
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commitdiff
2015-09-10
Jim Procter
JAL-1645 source formatting and organise imports
tree
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commitdiff
2015-08-26
gmungoc
JAL-1830 dropped reference counts for mappings, instead...
tree
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commitdiff
2015-07-23
Jim Procter
JAL-1551 JAL-1819 formatting/imports
tree
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commitdiff
2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-09-23
darolmar
JAL-1355
tree
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commitdiff
2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
tree
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commitdiff
2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
tree
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commitdiff
2014-05-22
Jim Procter
JAL-1503 update version in GPL header
tree
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commitdiff
2014-01-29
Jim Procter
JAL-1432 updated copyright notices
tree
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commitdiff
2012-11-08
jprocter
tidy imports
tree
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commitdiff
2012-10-22
jprocter
Jalview 2.8 Source Header
tree
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commitdiff
2012-10-03
jprocter
formatting
tree
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commitdiff
2012-06-13
jprocter
javatidy
tree
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commitdiff
2012-06-12
jprocter
JAL-1115 refactor base collection for Alignment from...
tree
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commitdiff
2011-10-10
jprocter
update author list in license for (JAL-826)
tree
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commitdiff
2011-09-27
jprocter
apply version 2.7 copyright
tree
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commitdiff
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
tree
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commitdiff
2011-02-17
jprocter
classCast exception - attempting to update registry...
tree
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commitdiff
2010-09-23
jprocter
apply jalview code style
tree
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commitdiff
2010-09-23
jprocter
Jalview 2.6 source licence
tree
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commitdiff
2010-04-30
jprocter
jalview 2.5 release banner
tree
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commitdiff
2009-06-19
jprocter
implementation error warning todo
tree
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commitdiff
2009-06-19
jprocter
debug and cyclefix for dbrefs with embedded sequences
tree
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commitdiff
2009-06-19
jprocter
javadoc and datastoreitem registry support for binding...
tree
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commitdiff
2009-06-19
jprocter
more efficient synchronized methods
tree
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commitdiff
2009-06-12
jprocter
synching of all db references and sequence features
tree
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commitdiff
2009-06-12
jprocter
prevent dbref->map->to->datasetsequence->dbref-> type...
tree
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commitdiff
2009-06-12
jprocter
reinstate links on features
tree
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commitdiff
2009-06-12
jprocter
datastore registration and class cast exception fix
tree
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commitdiff
2009-06-12
jprocter
prevent and keep track of which objects handling elemen...
tree
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commitdiff
2009-06-08
jprocter
apply gpl development license
tree
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commitdiff
2008-11-12
jprocter
refactored to propery separate addToDocument,addFromDoc...
tree
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commitdiff
2008-09-04
jprocter
merge from 2_4_Release branch
tree
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commitdiff
2007-12-21
jprocter
bugfixes
tree
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commitdiff
2007-10-24
jprocter
null pointer exception and warning for update of tree
tree
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commitdiff
2007-09-28
jprocter
better support for TreeNode binding
tree
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commitdiff
2007-09-25
jprocter
ascii file
tree
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commitdiff
2007-09-25
jprocter
beginning of vamsas/local object synchronization patter...
tree
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commitdiff
2007-09-18
jprocter
fix class-cast exception and added beginnings of DBRef...
tree
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commitdiff
2007-09-07
jprocter
Maps are usually added to DbRefs which are added to...
tree
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commitdiff
2007-08-30
jprocter
sequenceMappings go on boh datasets involved in a mappi...
tree
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commitdiff
2007-08-30
jprocter
improved vamsas treenode node binding support
tree
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commitdiff
2007-08-23
jprocter
proper vamsas style binding of alignment sequence objec...
tree
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commitdiff
2007-07-25
jprocter
better vamsas tree io (for when there are no nodemappings)
tree
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commitdiff
2007-07-13
jprocter
refactored form of vamsas document interaction code
tree
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commitdiff
2007-06-17
jprocter
vamsas-client-1.2 schema (mappings and Treenodes) and...
tree
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commitdiff