2022-01-26 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2022-01-17 |
Ben Soares | JAL-3703 fix Gff3 shared InputStream with embedded... |
tree | commitdiff |
2022-01-17 |
Ben Soares | close filehandles straight after parse, without setting... |
tree | commitdiff |
2022-01-11 |
Ben Soares | JAL-3703 fix Gff3 shared InputStream with embedded... |
tree | commitdiff |
2022-01-11 |
Ben Soares | close filehandles straight after parse, without setting... |
tree | commitdiff |
2021-10-01 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2021-09-30 |
Ben Soares | JAL-1260 Added .gbk to GenBank extensions. Added GenBa... |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 less ambiguous base class name for EMBL and... |
tree | commitdiff |
2021-09-23 |
Jim Procter | JAL-3821 ported to refactored FlatFile parser |
tree | commitdiff |
2021-09-21 |
Ben Soares | JAL-3691 automatic insertion of Locale.ROOT to toUpperC... |
tree | commitdiff |
2021-09-21 |
Jim Procter | Merge branch 'doc/JAL-3746_Release_2_11_2' into develop |
tree | commitdiff |
2021-09-21 |
Jim Procter | Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'... |
tree | commitdiff |
2021-09-21 |
Jim Procter | JAL-3829 ignore the fake ID generated when a PDB format... |
tree | commitdiff |
2021-09-17 |
Ben Soares | JAL-1260 rudimentary parsing of LOCUS line to at least... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 refactored multi-line qualifier separators |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 file formats and IdentifyFile updates for... |
tree | commitdiff |
2021-09-17 |
gmungoc | JAL-1260 refactored GenBank (and EMBL) flat file parser |
tree | commitdiff |
2021-09-17 |
Jim Procter | JAL-1260 FileFormat entry for EMBL/GENBANK: TODO: creat... |
tree | commitdiff |
2021-09-16 |
gmungoc | JAL-3779 apply properties to all groups with given... |
tree | commitdiff |
2021-09-16 |
Jim Procter | Merge branch 'develop' into doc/JAL-3746_Release_2_11_2 |
tree | commitdiff |
2021-09-16 |
gmungoc | JAL-3761 extra check that VCF feature is fully mappable... |
tree | commitdiff |
2021-09-16 |
Ben Soares | JAL-3761 listToArray became rangeListToArray |
tree | commitdiff |
2021-09-15 |
Jim Procter | JAL-3741 http to https (and jar to jvp for exampleFile... |
tree | commitdiff |
2021-09-15 |
Ben Soares | Merge branch 'develop' into merge/develop_ben2 |
tree | commitdiff |
2021-09-02 |
gmungoc | JAL-3509 JAL-1842 minor tidying of code |
tree | commitdiff |
2021-09-02 |
gmungoc | JAL-3509 coerce RESNUM to hidden (really) after fetchin... |
tree | commitdiff |
2021-08-11 |
Jim Procter | JAL-2349 remove test code |
tree | commitdiff |
2021-08-11 |
Jim Procter | Merge branch 'features/JAL-2349_matrixvis' into feature... |
tree | commitdiff |
2021-02-17 |
Jim Procter | JAL-3821 patch for 2.11.2 to retrieve RNA ENA records... patch/for2.11.2/JAL-3821_ena_rna_moltype |
tree | commitdiff |
2021-02-17 |
Jim Procter | Merge branch 'feature/JAL-3692enaEndpoint' into patch... |
tree | commitdiff |
2020-12-12 |
gmungoc | JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview... |
tree | commitdiff |
2020-12-11 |
gmungoc | JAL-3785 set full title on automatically opened Overvie... |
tree | commitdiff |
2020-11-13 |
Ben Soares | JAL-3775 Eclipse re-formatting commit |
tree | commitdiff |
2020-11-13 |
Ben Soares | JAL-3633 Small changes to allow future fitting with... |
tree | commitdiff |
2020-11-12 |
Ben Soares | JAL-3676 Removed BACKUPFILESPRESETENTRY logging for... |
tree | commitdiff |
2020-11-10 |
Ben Soares | JAL-3628 Fixed oddly worded and non-formatted error... |
tree | commitdiff |
2020-11-10 |
Ben Soares | JAL-3628 Fix for slightly incorrect boolean usage to... |
tree | commitdiff |
2020-11-10 |
Ben Soares | JAL-3628 Even more Cache.log.debug statements |
tree | commitdiff |
2020-11-10 |
Ben Soares | JAL-3628 More Cache.log.debug statements |
tree | commitdiff |
2020-11-06 |
Ben Soares | JAL-3628 Changed other calls to renameTo to use BackupF... |
tree | commitdiff |
2020-11-06 |
Ben Soares | JAL-3628 Changed all file1.renameTo(file2) calls to... |
tree | commitdiff |
2020-10-29 |
Jim Procter | Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11... |
tree | commitdiff |
2020-10-28 |
Jim Procter | JAL-3725 patch EMBL flat file to exclude stop codon... |
tree | commitdiff |
2020-10-28 |
gmungoc | JAL-3725 restrict mapped virtual feature location to... |
tree | commitdiff |
2020-09-21 |
Jim Procter | Merge branch 'merge_review/JAL-3490_2_11_2_develop... |
tree | commitdiff |
2020-09-17 |
Jim Procter | JAL-3741 http to https (and jar to jvp for exampleFile... |
tree | commitdiff |
2020-09-14 |
Ben Soares | Merge branch 'feature/JAL-3615gzipXfam' into develop |
tree | commitdiff |
2020-08-27 |
Ben Soares | Merge branch 'releases/Release_2_11_1_Branch' into... merge/JAL_1842+JAL-3509+releases_Release_2_11_1_Branch |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615... |
tree | commitdiff |
2020-08-21 |
Jim Procter | JAL-3615 code tidy, improve unit test |
tree | commitdiff |
2020-08-20 |
Ben Soares | JAL-2656 better read of (potential) gzip magic bytes |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-2656 Java 8 compatible test for gzipped, refactored... |
tree | commitdiff |
2020-08-18 |
gmungoc | JAL-3692 parse multiline CDS location correctly |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/JAL-3691_No_score_models_available... |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 don't init the combo box's history cache for... |
tree | commitdiff |
2020-08-17 |
Jim Procter | JAL-3490 merged with 2.11.2 develop |
tree | commitdiff |
2020-08-17 |
Jim Procter | Merge branch 'patch/Release_2_11_1_Branch_patch_JAL... |
tree | commitdiff |
2020-08-12 |
Ben Soares | JAL-3676 Removed BACKUPFILESPRESETENTRY logging for... |
tree | commitdiff |
2020-08-10 |
Jim Procter | JAL-3691 toUpperCase(Locale.ROOT) for all standard... |
tree | commitdiff |
2020-08-10 |
Jim Procter | Merge branch 'releases/Release_2_11_1_Branch' into... |
tree | commitdiff |
2020-08-10 |
Jim Procter | JAL-3628 JAL-3708 call Cache.initLogger() before using... |
tree | commitdiff |
2020-08-09 |
Ben Soares | JAL-3691 Changed .toUppoerCase().startsWith(...) to... |
tree | commitdiff |
2020-08-05 |
Ben Soares | JAL-3691 Changed .toUppoerCase().startsWith(...) to... |
tree | commitdiff |
2020-08-05 |
Jim Procter | Merge branch 'patch/JAL-3692enaEndpointFlatfile' into... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-05 |
gmungoc | JAL-3692 parse multiline feature qualifiers and escaped... |
tree | commitdiff |
2020-08-05 |
Jim Procter | Merge branch 'merge/JAL-3628+JAL-3608+JAL-3609+JAL... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-08-03 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS... |
tree | commitdiff |
2020-07-31 |
Ben Soares | Merge branch 'releases/Release_2_11_1_Branch' into... |
tree | commitdiff |
2020-07-28 |
Jim Procter | Merge branch 'feature/JAL-3615gzipXfam' into develop |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-3615 JAL-2656 missing import after cherrypick |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise non-HTTP URI input streams as gzippe... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise Gzipped file input streams by their... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise non-HTTP URI input streams as gzippe... |
tree | commitdiff |
2020-07-28 |
Jim Procter | JAL-2656 recognise Gzipped file input streams by their... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 set CDS /product as EMBLCDSPROTEIN description |
tree | commitdiff |
2020-07-27 |
gmungoc | JAL-3692 refactor/complete parsing, more unit test... |
tree | commitdiff |
2020-07-27 |
Jim Procter | JAL-3696 log the error message from the exception to... |
tree | commitdiff |
2020-07-27 |
Jim Procter | JAL-3696 log the error message from the exception to... |
tree | commitdiff |
2020-07-24 |
gmungoc | JAL-3692 parse DE for description, and other refactoring... |
tree | commitdiff |
2020-07-22 |
gmungoc | JAL-3692 unit test (J03321), fixes, dbrefs; todo: prote... |
tree | commitdiff |
2020-07-21 |
gmungoc | JAL-3692 EMBL flatfile fetcher / parser (todo: CDS... |
tree | commitdiff |
2020-07-07 |
Ben Soares | JAL-3628 Fixed oddly worded and non-formatted error... |
tree | commitdiff |
2020-07-06 |
gmungoc | JAL-3311 JAL-3141 JAL-3144 tidying obsolete message... |
tree | commitdiff |
2020-07-06 |
Ben Soares | JAL-3628 Fix for slightly incorrect boolean usage to... |
tree | commitdiff |
2020-07-06 |
Ben Soares | JAL-3628 Even more Cache.log.debug statements |
tree | commitdiff |
2020-07-04 |
Ben Soares | JAL-3628 More Cache.log.debug statements |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-2656 JAL-3615 check response headers to test for... |
tree | commitdiff |
2020-07-02 |
gmungoc | JAL-3615 used gzip endpoints for Pfam and Rfam |
tree | commitdiff |
2020-06-30 |
Ben Soares | JAL-3676 Added Log Level ComboBox and Copy to Clipboard... |
tree | commitdiff |
2020-06-29 |
Jim Procter | Merge branch 'bug/JAL-3490findSpanHiddenGaps' into... |
tree | commitdiff |
2020-06-24 |
Ben Soares | JAL-3667 Fixed single backupfile error deleting the... |
tree | commitdiff |
2020-06-15 |
Ben Soares | JAL-3628 Changed other calls to renameTo to use BackupF... |
tree | commitdiff |
2020-06-08 |
Ben Soares | JAL-3628 Changed all file1.renameTo(file2) calls to... |
tree | commitdiff |
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