2016-09-29 |
gmungoc | JAL-2213 made RESNUM constant private (not used elsewhe... |
tree | commitdiff |
2016-09-23 |
tcofoegbu | Merge branch 'develop' of https://source.jalview.org... |
tree | commitdiff |
2016-09-23 |
tcofoegbu | JAL-2164 JAL-1919 fixed failed revert commit |
tree | commitdiff |
2016-09-22 |
gmungoc | JAL-1421 typed ResidueProperties.propHash; JAL-2176... |
tree | commitdiff |
2016-09-16 |
gmungoc | JAL-2164 removed unused parameters from JmolParser... |
tree | commitdiff |
2016-09-13 |
tcofoegbu | Revert "JAL-2164 JAL-1919 disabled and removed PDB... |
tree | commitdiff |
2016-09-13 |
tcofoegbu | JAL-2164 JAL-1919 disabled and removed PDB file parser... |
tree | commitdiff |
2016-09-07 |
Jim Procter | Merge branch 'develop' into bug/JAL-1803_JAL-2157 |
tree | commitdiff |
2016-09-07 |
Jim Procter | JAL-1803 JAL-1919 set type when structure file is parsed |
tree | commitdiff |
2016-09-04 |
Jim Procter | JAL-2148 JAL-1803 JAL-1919 resolve type for mmCIF loade... |
tree | commitdiff |
2016-09-01 |
gmungoc | JAL-1421 add generics to NJTree, refactor recursive... |
tree | commitdiff |
2016-08-30 |
Jim Procter | Merge branch 'develop' into merge/develop_bug/JAL-2154p... |
tree | commitdiff |
2016-08-26 |
gmungoc | Merge branch 'develop' into bug/JAL-1841rnaSecStr |
tree | commitdiff |
2016-08-25 |
Jim Procter | Merge branch 'develop' into refactor/JAL-2106_sourceDbR... |
tree | commitdiff |
2016-08-24 |
Jim Procter | JAL-2106 removed setSourceDBRef, refactor getSourceDBRe... |
tree | commitdiff |
2016-08-24 |
gmungoc | JAL-1424 undo i18n of exception message |
tree | commitdiff |
2016-08-22 |
gmungoc | JAL-2175 code tidying |
tree | commitdiff |
2016-08-22 |
gmungoc | JAL-2175 code/test fixes/tidy for PFAM/MSF/JSON roundtrip |
tree | commitdiff |
2016-08-12 |
gmungoc | JAL-1841 bug fixes / code tidy for rna SS rendering... |
tree | commitdiff |
2016-07-26 |
tcofoegbu | JAL-2157 bugfix for issues from enum refactoring |
tree | commitdiff |
2016-07-25 |
tcofoegbu | JAL-2157 bugfix for regression from commit 82a6c8e2e25b... |
tree | commitdiff |
2016-07-21 |
Jim Procter | Merge branch 'apifix/JAL-1926_JAL-2106' into develop |
tree | commitdiff |
2016-07-20 |
Jim Procter | JAL-1926 JAL-2106 fix name for flag controlling additio... |
tree | commitdiff |
2016-07-20 |
Jim Procter | JAL-1926 JAL-2106 remove startRes/endRes fields - not... |
tree | commitdiff |
2016-07-19 |
tcofoegbu | JAL-1919 set default structure file format to mmCIF... |
tree | commitdiff |
2016-07-14 |
tcofoegbu | JAL-1919 house-keeping |
tree | commitdiff |
2016-07-08 |
tcofoegbu | JAL-1919 Fixed failing tests, enabled HETATM processing... |
tree | commitdiff |
2016-06-30 |
tcofoegbu | JAL-1919 updated PDBSequenceFetcherTest and JMol parser... |
tree | commitdiff |
2016-06-22 |
gmungoc | JAL-1982 defensive checks for null annotations array |
tree | commitdiff |
2016-06-21 |
Jim Procter | Merge branch 'features/JAL-1956_featureStyles' into... |
tree | commitdiff |
2016-06-17 |
tcofoegbu | JAL-1976 clear message if export is cancelled at 'Rende... |
tree | commitdiff |
2016-06-17 |
tcofoegbu | JAL-1976 improved exception handler. |
tree | commitdiff |
2016-06-17 |
tcofoegbu | JAL-1976 added an intermediate message between a user... |
tree | commitdiff |
2016-06-10 |
tcofoegbu | JAL-1479 updated SIFTS FTP download URL, added improvem... |
tree | commitdiff |
2016-05-26 |
tcofoegbu | JAL-1911 bugfix - do not save i18n text in preference... |
tree | commitdiff |
2016-05-26 |
tcofoegbu | JAL-1911 bugfix - do not save i18n text in preference... |
tree | commitdiff |
2016-05-17 |
tcofoegbu | JAL-1270 Fixed anntatedPDBFileInputTest and updated... |
tree | commitdiff |
2016-05-10 |
gmungoc | Merge branch 'develop' into features/JAL-1956_featureStyles |
tree | commitdiff |
2016-05-09 |
gmungoc | JAL-2098 identify feature file with "<" in feature... |
tree | commitdiff |
2016-05-09 |
gmungoc | JAL-2018 export graduated feature colours correctly |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 add ID,clinical_significance to feature attrib... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-2041 clinical_significance shown on sequence featur... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-1421 typed map / lists, explicit imports, method... |
tree | commitdiff |
2016-04-14 |
gmungoc | JAL-1270 JAL-653 use 'parse immediately' FeaturesFile... |
tree | commitdiff |
2016-03-24 |
tcofoegbu | JAL-1919 Settings to disable duplicate generation of... |
tree | commitdiff |
2016-03-24 |
tcofoegbu | JAL-1919 Added ability to generate temprature factor... |
tree | commitdiff |
2016-03-24 |
tcofoegbu | fixed applet build |
tree | commitdiff |
2016-03-23 |
tcofoegbu | JAL-2009 added programmatic custom feature setting... |
tree | commitdiff |
2016-03-22 |
gmungoc | JAL-1191 isolated SequenceOntology (BioJava wrapper... |
tree | commitdiff |
2016-03-21 |
tcofoegbu | develop merge |
tree | commitdiff |
2016-03-15 |
tcofoegbu | JAL-1919 refined structure view annotation settings... |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 fixed bug causing PDBfile test failure |
tree | commitdiff |
2016-03-03 |
tcofoegbu | JAL-1919 PDBfile and JmolParser refactor |
tree | commitdiff |
2016-02-25 |
tcofoegbu | JAL-1919 initial support for mmCIF using JMol API.... |
tree | commitdiff |
2016-02-25 |
gmungoc | JAL-2015 parse/write Jalview feature format pushed... |
tree | commitdiff |
2016-02-24 |
gmungoc | JAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1705 JAL-1191 more terms added to hard-coded version |
tree | commitdiff |
2016-02-19 |
gmungoc | JAL-1706 reverted setting start position as too confusi... |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1191 additions to SOLite, tweak to test |
tree | commitdiff |
2016-02-12 |
gmungoc | JAL-1705 take feature ID for description if nothing... |
tree | commitdiff |
2016-02-12 |
gmungoc | Merge branch 'develop' into |
tree | commitdiff |
2016-02-09 |
tcofoegbu | merge develop |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1976 catch and handle OOM Error |
tree | commitdiff |
2016-02-09 |
tcofoegbu | JAL-1976 Added progress indicators for HTML_SVG and... |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 further unit tests |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1191 more terms added to SequenceOntologyLite |
tree | commitdiff |
2016-02-01 |
gmungoc | JAL-1705 JAL-1191 SequenceOntologyLite added as hard... |
tree | commitdiff |
2016-01-28 |
gmungoc | Merge branch 'develop' into JAL-1705_trialMerge |
tree | commitdiff |
2016-01-27 |
gmungoc | JAL-1705 add exon name to features and render on peptid... |
tree | commitdiff |
2016-01-26 |
gmungoc | JAL-1705 derive transcript sequences from gene sequence... |
tree | commitdiff |
2016-01-25 |
gmungoc | JAL-1705 EnsemblGene added, and related refactoring |
tree | commitdiff |
2016-01-23 |
gmungoc | JAL-1705 compute peptide variants from dna; add "conseq... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-653 refactor / tidy |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-653 JAL-1705 set strand for GFF sequence feature |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-653 comments/javadoc tidy only |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1796 parse ensembl genomic coordinates to set start... |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 include dummy sequences in returned alignment |
tree | commitdiff |
2016-01-21 |
gmungoc | JAL-1705 added isSequenceVariant(), commonly used SO... |
tree | commitdiff |
2016-01-21 |
tcofoegbu | JAL-1919 basic support for importing and viewing mmCIF... |
tree | commitdiff |
2016-01-12 |
gmungoc | JAL-1191 cache isA (great-)grandparents as well for... |
tree | commitdiff |
2016-01-11 |
tcofoegbu | JAL-1991 bug fix for some flat-file printers to check... |
tree | commitdiff |
2016-01-05 |
gmungoc | Merge remote-tracking branch 'origin/features/JAL-1705_... |
tree | commitdiff |
2016-01-05 |
gmungoc | JAL-1191 check for obsolete term when descriptions... |
tree | commitdiff |
2015-12-23 |
gmungoc | JAL-1191 zipped SO OBO file added to /resources, more... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-1191 and provide the SO OBO file in /resources :-) |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-1191 SequenceOntology wrapping/caching SO.OBO via... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-1191 stub class for a SequenceOntology wrapper |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 set showSequenceFeatures=true on loading a... |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 GFF new/refactored helper classes |
tree | commitdiff |
2015-12-22 |
gmungoc | JAL-653 hold AlignedCodonFrame collections as list... |
tree | commitdiff |
2015-11-30 |
gmungoc | JAL-652 further refactoring / tests |
tree | commitdiff |
2015-11-21 |
gmungoc | JAL-653 JAL-1968 FeaturesFile now handles Jalview or... |
tree | commitdiff |
2015-11-11 |
tcofoegbu | merge |
tree | commitdiff |
2015-11-10 |
Jim Procter | JAL-653 added missing pragma string to processing filter |
tree | commitdiff |
2015-10-30 |
Jim Procter | JAL-1954 rejigged PFAMFile to split on â\tâ if no space... |
tree | commitdiff |
2015-10-28 |
tcofoegbu | JAL-1887 JAL-1479 bugfix for incorrect start/end for... |
tree | commitdiff |
2015-10-22 |
tcofoegbu | JAL-1479 added basic support for SIFTs mapping - more... |
tree | commitdiff |
2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-653_JAL-1766_h... |
tree | commitdiff |
2015-10-15 |
Jim Procter | Merge branch 'develop' into features/JAL-1705_ensembl |
tree | commitdiff |
2015-10-15 |
tcofoegbu | JAL-1479 refactored SequenceI interface - changed getDB... |
tree | commitdiff |
next |