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JAL-3541 removed clover report generation debug flag (utf-8 encoding enforcement...
[jalview.git] / src / jalview / renderer /
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature... tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes tree | commitdiff
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles tree | commitdiff
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-22 gmungocJAL-2446 optimised new method to find feature colour... tree | commitdiff
2017-03-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport tree | commitdiff
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... tree | commitdiff
2017-03-20 gmungocJAL-2446 FeatureStore with NCList - work in progress tree | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code tree | commitdiff
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder tree | commitdiff
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed' tree | commitdiff
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat... tree | commitdiff
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates tree | commitdiff
2017-03-14 gmungocJAL-2438 Javadoc updates tree | commitdiff
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies tree | commitdiff
2017-03-13 gmungocJAL-2438 corrected handling of default colour tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-02-10 gmungocJAL-2371 small move of code, typo correction tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-06 gmungocJAL-2371 correct Clustal, Blosum, PID colouring of... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-17 gmungocJAL-2323 revert to thread-safe iteration over array... tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature... tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation... tree | commitdiff
2016-08-29 gmungocJAL-1841 robustness fix bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocMerge branch 'develop' into bug/JAL-1841rnaSecStr tree | commitdiff
2016-08-26 gmungocJAL-1854 comment switch case fallthrough tree | commitdiff
2016-08-24 gmungocJAL-1854 declare immutable class as final tree | commitdiff
2016-08-12 gmungocJAL-1841 bug fixes / code tidy for rna SS rendering... tree | commitdiff
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column... tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-06 Jim ProcterJAL-192 fix javadoc tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables tree | commitdiff
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... tree | commitdiff
2016-05-04 gmungocJAL-2090 removed test for Java > 1.1 to enable transparency tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 drop isSelected(int) in favour of original... tree | commitdiff
2016-04-04 Jim ProcterJAL-2001 use fast column selection test tree | commitdiff
2016-02-24 gmungocJAL-2015 JAL-1956 rollout of FeatureColourI in place of JAL-1956_featureStyles tree | commitdiff
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed... tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2 tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin... tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src tree | commitdiff
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'bug/JAL-1819_isNaN' into Release_2_9_Branch tree | commitdiff
2015-07-23 Jim ProcterMerge branch 'bug/JAL-1819_isNaN' into develop tree | commitdiff
2015-07-23 Jim ProcterJAL-1819 use Float.isNaN() to check for NaNs! tree | commitdiff
2015-07-15 gmungocJAL-1813 only pair up A-Z with a-z if annotation is RNA tree | commitdiff
2015-07-08 gmungocJAL-1759 merge from develop tree | commitdiff
2015-07-07 tcofoegbuJAL-1805 test envirionment separation tree | commitdiff
2015-03-27 tcofoegbumerge commit tree | commitdiff
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch tree | commitdiff
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... tree | commitdiff
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... tree | commitdiff
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor tree | commitdiff
2015-01-09 Jim ProcterJAL-1483 formatting tree | commitdiff
2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence... tree | commitdiff
2014-12-22 Jim ProcterMerge: 497958b 68dcaa7 tree | commitdiff
2014-12-15 Jim ProcterJAL-1620 version bump and release notes tree | commitdiff
2014-11-23 Jim Procteremploy test and secondary structure character for deter... tree | commitdiff
2014-11-23 Jim ProcterJAL-1569 formatting tree | commitdiff
2014-11-14 Jim ProcterMerge branch 'develop' into JAL-1483_featureBasedTreeCalc tree | commitdiff
2014-08-08 j.procter@dundee... JAL-1482 feature renderer and manipulation code refacto... tree | commitdiff
2014-07-18 j.procter@dundee... JAL-1520 switch between Protein and non-canonical RNA... tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1520 fix unicode translation errors. tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 source formatting tree | commitdiff
2014-06-06 Jim ProcterJAL-1517 fix copyright for 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterJAL-1517 update copyright to version 2.8.2 tree | commitdiff
2014-06-05 Jim ProcterMerge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch tree | commitdiff
2014-05-22 Jim ProcterJAL-1503 update version in GPL header tree | commitdiff
2014-02-18 Jim ProcterMerge branch 'JAL-1445' into develop tree | commitdiff
2014-01-29 Jim ProcterJAL-1432 updated copyright notices tree | commitdiff
2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work... tree | commitdiff
2013-07-12 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment... tree | commitdiff
2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is... tree | commitdiff
2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop tree | commitdiff
2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consen... tree | commitdiff
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